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(-) Description

Title :  SOLUTION NMR STRUCTURE OF STRESS-INDUCED-PHOSPHOPROTEIN 1 STI1 FROM HOMO SAPIENS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR4403E
 
Authors :  Y. Tang, G. Liu, K. Hamilton, C. Ciccosanti, R. Shastry, B. Rost, T. B. Ac R. Xiao, J. K. Everett, G. T. Montelione, Northeast Structural Geno Consortium (Nesg)
Date :  28 Dec 11  (Deposition) - 14 Mar 12  (Release) - 14 Mar 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Structural Genomics, Northeast Structural Genomics Consortium (Nesg), Psi-Biology, Protein Structure Initiative, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Y. Tang, G. Liu, K. Hamilton, C. Ciccosanti, R. Shastry, B. Rost, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione
Northeast Structural Genomics Consortium Target Hr4403E
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - STRESS-INDUCED-PHOSPHOPROTEIN 1
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)PMGK
    Expression System Taxid469008
    Expression System VectorHR4403E-356-477-14.2
    FragmentTPR REPEATS 7-9, RESIDUES 356-477
    GeneSTIP1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSTI1, HSC70/HSP90-ORGANIZING PROTEIN, HOP, RENAL CARCINOMA ANTIGEN NY-REN-11, TRANSFORMATION-SENSITIVE PROTEIN IEF SSP 3521

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LNI)

(-) Sites  (0, 0)

(no "Site" information available for 2LNI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LNI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LNI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LNI)

(-) PROSITE Motifs  (1, 3)

NMR Structure (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TPRPS50005 TPR repeat profile.STIP1_HUMAN4-37
38-71
72-105
225-258
259-292
300-333
360-393
394-427
428-461
  3-
-
-
-
-
-
A:16-49
A:50-83
A:84-117
NMR Structure * (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TPRPS50005 TPR repeat profile.STIP1_HUMAN4-37
38-71
72-105
225-258
259-292
300-333
360-393
394-427
428-461
  3-
-
-
-
-
-
A:16-49
A:50-83
A:84-117

(-) Exons   (6, 6)

NMR Structure (6, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2ENST000003052182ENSE00001303761chr11:63953587-63953742156STIP1_HUMAN1-330--
1.3ENST000003052183ENSE00001292614chr11:63960550-63960759210STIP1_HUMAN4-73700--
1.4ENST000003052184ENSE00001196235chr11:63961661-63961802142STIP1_HUMAN74-121480--
1.5ENST000003052185ENSE00001196229chr11:63961951-63962092142STIP1_HUMAN121-168480--
1.6ENST000003052186ENSE00001196227chr11:63963117-63963285169STIP1_HUMAN168-224570--
1.7ENST000003052187ENSE00001139237chr11:63964743-63964869127STIP1_HUMAN225-267430--
1.8ENST000003052188ENSE00001139229chr11:63964965-63965067103STIP1_HUMAN267-301350--
1.9ENST000003052189ENSE00001139278chr11:63965326-63965446121STIP1_HUMAN301-341411A:1-9 (gaps)21
1.10ENST0000030521810ENSE00001310490chr11:63967412-6396750897STIP1_HUMAN342-374331A:10-3021
1.11ENST0000030521811ENSE00001317889chr11:63967641-63967765125STIP1_HUMAN374-415421A:30-7142
1.12ENST0000030521812ENSE00001169747chr11:63970348-6397038437STIP1_HUMAN416-428131A:72-8413
1.13ENST0000030521813ENSE00001169731chr11:63970597-63970700104STIP1_HUMAN428-462351A:84-11835
1.14ENST0000030521814ENSE00001169722chr11:63970922-63971094173STIP1_HUMAN463-520581A:119-13315
1.15bENST0000030521815bENSE00001518832chr11:63971526-63972020495STIP1_HUMAN520-543240--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:133
 aligned with STIP1_HUMAN | P31948 from UniProtKB/Swiss-Prot  Length:543

    Alignment length:172
                                   315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475  
          STIP1_HUMAN   306 IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQERLAYINPDLALEEKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 477
               SCOP domains d2l            nia_ A                           : automated matches                                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...------------......---------------------------....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE TPR  PDB: - UniProt: 300-333--------------------------TPR  PDB: A:16-49 UniProt: 360-393TPR  PDB: A:50-83 UniProt: 394-427TPR  PDB: A:84-117                ---------------- PROSITE
           Transcript 1 (1) Exon 1.9  PDB: A:1-9 (gaps)         Exon 1.10  PDB: A:10-30          -----------------------------------------Exon 1.12    ----------------------------------Exon 1.14       Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------Exon 1.11  PDB: A:30-71 UniProt: 374-415  ------------Exon 1.13  PDB: A:84-118           --------------- Transcript 1 (2)
                 2lni A   1 MGH------------HHHHHS---------------------------HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
                              |      -     |   8|        -         -        11        21        31        41        51        61        71        81        91       101       111       121       131  
                              3            4    9                          10                                                                                                                           

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LNI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LNI)

(-) Gene Ontology  (10, 10)

NMR Structure(hide GO term definitions)
Chain A   (STIP1_HUMAN | P31948)
molecular function
    GO:0030544    Hsp70 protein binding    Interacting selectively and non-covalently with Hsp70 proteins, any of a group of heat shock proteins around 70kDa in size.
    GO:0051087    chaperone binding    Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport.
    GO:0008022    protein C-terminus binding    Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxy function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        STIP1_HUMAN | P319481elr 1elw 2nc9 3esk 3fwv

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