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(-) Description

Title :  NMR STRUCTURE OF THE LECTIN CCL2
 
Authors :  M. Schubert, M. A. Walti, P. Egloff, S. Bleuler-Martinez, M. Aebi, F. F. H. Allain, M. Kunzler
Date :  29 Aug 11  (Deposition) - 06 Jun 12  (Release) - 06 Jun 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Schubert, S. Bleuler-Martinez, A. Butschi, M. A. Walti, P. Egloff, K. Stutz, S. Yan, I. B. Wilson, M. O. Hengartner, M. Aebi, F. H. Allain, M. Kunzler
Plasticity Of The Beta-Trefoil Protein Fold In The Recognition And Control Of Invertebrate Predators And Parasites By A Fungal Defence System
Plos Pathog. V. 8 02706 2012
PubMed-ID: 22615566  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1002706

(-) Compounds

Molecule 1 - CCL2 LECTIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET22B
    Gene: CCL2
    Organism Common: INKY CAP FUNGUS
    Organism Scientific: COPRINOPSIS CINEREA
    Organism Taxid: 5346

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2LIE)

(-) Sites  (0, 0)

(no "Site" information available for 2LIE)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2LIE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2LIE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2LIE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2LIE)

(-) Exons   (0, 0)

(no "Exon" information available for 2LIE)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:153
 aligned with B3GA02_COPCI | B3GA02 from UniProtKB/TrEMBL  Length:142

    Alignment length:153
                            1           2                                                                                                                                            
                            |        -  |      9        19        29        39        49        59        69        79        89        99       109       119       129       139   
         B3GA02_COPCI     1 M-----------DSPAVTLSAGNYIIYNRVLSPRGEKLALTYPGRQRTPVTVSPLDGSSEQAWILRSYDSNSNTWTISPVGSPNSQIGWGAGNVPVVLPPNNYVWTLTLTSGGYNIQDGKRTVSWSLNNATAGEEVSIGADATFSGRWVIEKV 142
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee.........eeee.........eeee........eeeeeeehhh.eeeeee......eeeee...eeeee.....eeeeee....eeee......eee..........eee........eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2lie A   1 MGHHHHHHHHSGDSPAVTLSAGNYIIYNRVLSPRGEKLALTYPGRQRTPVTVSPLDGSSEQAWILRSYDSNSNTWTISPVGSPNSQIGWGAGNVPVVLPPNNYVWTLTLTSGGYNIQDGKRTVSWSLNNATAGEEVSIGADATFSGRWVIEKV 153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2LIE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2LIE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2LIE)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (B3GA02_COPCI | B3GA02)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.

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  2lie
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B3GA02_COPCI | B3GA02: 2liq 4uso 4usp

(-) Related Entries Specified in the PDB File

2liq COMPLEX WITH A SUGAR