2L7R - JenaLib

Title :   SOLUTION NMR STRUCTURE OF N-TERMINAL UBIQUITIN-LIKE DOMAIN OF FUBI, A RIBOSOMAL PROTEIN S30 PRECURSOR FROM HOMO SAPIENS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET HR6166

Authors :   A. Lemak, A. Yee, S. Houliston, A. Semesi, R. Doherty, S. Dhe-Paganon, G. T. Montelione, C. Arrowsmith, Northeast Structural Genomics C (Nesg), Structural Genomics Consortium (Sgc)

Date :   20 Dec 10 (Deposition) - 05 Jan 11 (Release) - 22 Feb 12 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)
NMR Structure *: A  (1x)

Keywords :   Structural Genomics, Psi-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Protein Binding, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Lemak, A. Yee, S. Houliston, R. Doherty, A. Semesi, S. Dhe-Paganon, G. T. Montelione, C. Arrowsmith
Solution Nmr Structure Of N-Terminal Ubiquitin-Like Domain Of Fubi, A Ribosomal Protein S30 Precursor From Homo Sapiens. Northeast Structural Genomics Consortium (Nesg) Target Hr6166
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 1)

NMR Structure (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_019644	T	53	I	UBIM_HUMAN	Polymorphism	13807	A	T	53	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

NMR Structure * (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_019644	T	53	I	UBIM_HUMAN	Polymorphism	13807	A	T	53	I

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (2, 2)

NMR Structure (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	UBIQUITIN_2	PS50053	Ubiquitin domain profile.	UBIM_HUMAN	1-74	1	A:1-74
2	UBIQUITIN_1	PS00299	Ubiquitin domain signature.	UBIM_HUMAN	25-50	1	A:25-50

NMR Structure * (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	UBIQUITIN_2	PS50053	Ubiquitin domain profile.	UBIM_HUMAN	1-74	1	A:1-74
2	UBIQUITIN_1	PS00299	Ubiquitin domain signature.	UBIM_HUMAN	25-50	1	A:25-50

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:74
 aligned with UBIM_HUMAN | P35544 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:74
                                    10        20        30        40        50        60        70    
            UBIM_HUMAN    1 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 74
               SCOP domains d2l7ra_ A: automated matches                                               SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains ----ubiquitin-2l7rA01 A:5-72                                            -- Pfam domains
         Sec.struct. author .eeeee...eeeee.....hhhhhhhhhhhhhh.hhhhheeee..ee.....hhhhhh.....eeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------I--------------------- SAPs(SNPs)
                PROSITE (1) UBIQUITIN_2  PDB: A:1-74 UniProt: 1-74                                     PROSITE (1)
                PROSITE (2) ------------------------UBIQUITIN_1  PDB: A:25-50 ------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------- Transcript
                  2l7r A  1 MQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 74
                                    10        20        30        40        50        60        70

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (2, 2)

NMR Structure(hide GO term definitions)

Chain A (UBIM_HUMAN | P35544)

biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
	GO:0005575	cellular_component	The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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