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(-) Description

Title :  SOLUTION STRUCTURE OF A NONPHOSPHORYLATED PEPTIDE RECOGNIZING DOMAIN
 
Authors :  K. Dai, S. Liao, J. Zhang, X. Zhang, X. Tu
Date :  22 Nov 10  (Deposition) - 12 Oct 11  (Release) - 12 Oct 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Antitumor Protein, Cell Adhesion, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Dai, S. Liao, J. Zhang, X. Zhang, X. Tu
Solution Structure Of Tensin2 Sh2 Domain And Its Phosphotyrosine-Independent Interaction With Dlc-1
Plos One V. 6 21965 2011
PubMed-ID: 21765928  |  Reference-DOI: 10.1371/JOURNAL.PONE.0021965

(-) Compounds

Molecule 1 - TENSIN-LIKE C1 DOMAIN-CONTAINING PHOSPHATASE
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    Expression System VectorPET22
    Expression System Vector TypeVECTOR
    FragmentNONPHOSPHORYLATED PEPTIDE RECOGNIZING DOMAIN, SH2 DOMAIN, UNP RESIDUES 2-115
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymC1 DOMAIN-CONTAINING PHOSPHATASE AND TENSIN HOMOLOG, C1-TEN, TENSIN-2

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x)A
NMR Structure * (1x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2L6K)

(-) Sites  (0, 0)

(no "Site" information available for 2L6K)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L6K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2L6K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2L6K)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SH2PS50001 Src homology 2 (SH2) domain profile.TNS2_HUMAN1140-1247  1A:7-114
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SH2PS50001 Src homology 2 (SH2) domain profile.TNS2_HUMAN1140-1247  1A:7-114

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.3ENST000003142503ENSE00002176967chr12:53443680-53444044365TNS2_HUMAN1-25250--
1.4ENST000003142504ENSE00001702661chr12:53445639-53445747109TNS2_HUMAN26-62370--
1.5ENST000003142505ENSE00001602732chr12:53446239-5344627638TNS2_HUMAN62-74130--
1.6ENST000003142506ENSE00001706663chr12:53447195-5344723339TNS2_HUMAN75-87130--
1.7ENST000003142507ENSE00001646683chr12:53447558-5344759639TNS2_HUMAN88-100130--
1.8ENST000003142508ENSE00001602842chr12:53447749-5344779850TNS2_HUMAN101-117170--
1.9ENST000003142509ENSE00001622467chr12:53448054-53448225172TNS2_HUMAN117-174580--
1.10ENST0000031425010ENSE00000838131chr12:53448970-5344902051TNS2_HUMAN175-191170--
1.11aENST0000031425011aENSE00000938905chr12:53449352-53449474123TNS2_HUMAN192-232410--
1.11cENST0000031425011cENSE00000838133chr12:53449565-5344962965TNS2_HUMAN233-254220--
1.12ENST0000031425012ENSE00000838134chr12:53450797-5345088084TNS2_HUMAN254-282290--
1.13ENST0000031425013ENSE00000746463chr12:53451351-53451463113TNS2_HUMAN282-320390--
1.14ENST0000031425014ENSE00000746465chr12:53451557-5345161761TNS2_HUMAN320-340210--
1.15ENST0000031425015ENSE00000746467chr12:53451811-5345188676TNS2_HUMAN340-365260--
1.16ENST0000031425016ENSE00000746468chr12:53452100-53452229130TNS2_HUMAN366-409440--
1.17ENST0000031425017ENSE00000746469chr12:53452356-5345242166TNS2_HUMAN409-431230--
1.18ENST0000031425018ENSE00000746470chr12:53452498-53452611114TNS2_HUMAN431-469390--
1.19cENST0000031425019cENSE00000746471chr12:53452831-534540421212TNS2_HUMAN469-8734050--
1.20ENST0000031425020ENSE00000746472chr12:53454189-53454339151TNS2_HUMAN873-923510--
1.21ENST0000031425021ENSE00000746473chr12:53454459-53455048590TNS2_HUMAN923-11201980--
1.22ENST0000031425022ENSE00000491479chr12:53455164-5345525390TNS2_HUMAN1120-1150311A:1-1717
1.23ENST0000031425023ENSE00000746475chr12:53455599-53455724126TNS2_HUMAN1150-1192431A:17-5943
1.24ENST0000031425024ENSE00000746476chr12:53455937-5345602993TNS2_HUMAN1192-1223321A:59-9032
1.25ENST0000031425025ENSE00000746477chr12:53456160-5345623778TNS2_HUMAN1223-1249271A:90-11526
1.26bENST0000031425026bENSE00000838135chr12:53456404-5345648178TNS2_HUMAN1249-1275270--
1.27aENST0000031425027aENSE00000838136chr12:53456873-53457041169TNS2_HUMAN1275-1331570--
1.28ENST0000031425028ENSE00000746494chr12:53457133-5345720169TNS2_HUMAN1331-1354240--
1.29ENST0000031425029ENSE00000746496chr12:53457347-5345737630TNS2_HUMAN1354-1364110--
1.30aENST0000031425030aENSE00001411522chr12:53457528-53458155628TNS2_HUMAN1364-1409460--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:115
 aligned with TNS2_HUMAN | Q63HR2 from UniProtKB/Swiss-Prot  Length:1409

    Alignment length:115
                                  1143      1153      1163      1173      1183      1193      1203      1213      1223      1233      1243     
          TNS2_HUMAN   1134 QDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPISLPCCLRIPSK 1248
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhee...hhhhhhhhhh......eeeee......eeeeeee...............hhh.eeeeeeeee..eeee..........hhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------SH2  PDB: A:7-114 UniProt: 1140-1247                                                                        - PROSITE
           Transcript 1 (1) Exon 1.22        -----------------------------------------Exon 1.24  PDB: A:59-90         ------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.23  PDB: A:17-59 UniProt: 1150-1192 ------------------------------Exon 1.25  PDB: A:90-115   Transcript 1 (2)
                2l6k A    1 MDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPISLPCCLRIPSK  115
                                    10        20        30        40        50        60        70        80        90       100       110     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2L6K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L6K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2L6K)

(-) Gene Ontology  (19, 19)

NMR Structure(hide GO term definitions)
Chain A   (TNS2_HUMAN | Q63HR2)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0019900    kinase binding    Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004721    phosphoprotein phosphatase activity    Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0019725    cellular homeostasis    Any process involved in the maintenance of an internal steady state at the level of the cell.
    GO:0032963    collagen metabolic process    The chemical reactions and pathways involving collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0001822    kidney development    The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and/or excretes the end products of body metabolism in the form of urine.
    GO:0035264    multicellular organism growth    The increase in size or mass of an entire multicellular organism, as opposed to cell growth.
    GO:0048871    multicellular organismal homeostasis    Any process involved in the maintenance of an internal steady state at the level of the multicellular organism.
    GO:0008285    negative regulation of cell proliferation    Any process that stops, prevents or reduces the rate or extent of cell proliferation.
    GO:0006470    protein dephosphorylation    The process of removing one or more phosphoric residues from a protein.
    GO:0014850    response to muscle activity    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a muscle activity stimulus.
cellular component
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        TNS2_HUMAN | Q63HR22dkq 2kno 2loz 3hqc

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