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(-) Description

Title :  VILLIN HEAD PIECE DOMAIN OF HUMAN ABLIM2
 
Authors :  S. Bruton, M. Pfuhl
Date :  24 Sep 10  (Deposition) - 07 Sep 11  (Release) - 07 Sep 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Actin Binding, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Bruton, M. Pfuhl
Solution Nmr Study Of The Actin Binding Domain Of Ablim2
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ABLIM2 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLEICS-07
    Expression System Strain: BL21 STAR (INVITROGEN)
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: VILLIN HEAD PIECE DOMAIN (UNP RESIDUES 455-521)
    Gene: ABLIM2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2L3X)

(-) Sites  (0, 0)

(no "Site" information available for 2L3X)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2L3X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2L3X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2L3X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2L3X)

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1dENST000003419371dENSE00002025557chr4:8160481-816040775ABLM2_HUMAN1-440--
1.2ENST000003419372ENSE00001798266chr4:8108364-8108221144ABLM2_HUMAN4-52490--
1.3ENST000003419373ENSE00001651357chr4:8099009-8098826184ABLM2_HUMAN52-113620--
1.4ENST000003419374ENSE00001645970chr4:8090011-8089896116ABLM2_HUMAN113-152400--
1.5ENST000003419375ENSE00001741599chr4:8082529-8082403127ABLM2_HUMAN152-194430--
1.6ENST000003419376ENSE00001673927chr4:8079448-807935594ABLM2_HUMAN194-225320--
1.8ENST000003419378ENSE00001735996chr4:8062781-806269488ABLM2_HUMAN226-255300--
1.9ENST000003419379ENSE00001080335chr4:8055973-805591559ABLM2_HUMAN255-274200--
1.10ENST0000034193710ENSE00001080338chr4:8046968-804689178ABLM2_HUMAN275-300260--
1.12ENST0000034193712ENSE00001080331chr4:8038022-8037876147ABLM2_HUMAN301-349490--
1.14ENST0000034193714ENSE00001080332chr4:8031503-8031383121ABLM2_HUMAN350-390410--
1.16dENST0000034193716dENSE00001337667chr4:8022030-8021929102ABLM2_HUMAN390-424350--
1.17ENST0000034193717ENSE00001136408chr4:8021398-802134554ABLM2_HUMAN424-442190--
1.19ENST0000034193719ENSE00001136400chr4:8010829-801077753ABLM2_HUMAN442-459180--
1.20eENST0000034193720eENSE00001492451chr4:8009924-8009786139ABLM2_HUMAN460-506470--
1.21ENST0000034193721ENSE00001278544chr4:7994654-799459362ABLM2_HUMAN506-526210--
1.22ENST0000034193722ENSE00001278537chr4:7986620-798656655ABLM2_HUMAN527-545191A:1-11
1.23ENST0000034193723ENSE00001772276chr4:7985281-79852748ABLM2_HUMAN545-54731A:1-33
1.24bENST0000034193724bENSE00001278486chr4:7985071-798499181ABLM2_HUMAN548-574271A:4-3027
1.25cENST0000034193725cENSE00002068146chr4:7968830-7968029802ABLM2_HUMAN575-611371A:31-6737

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:67
 aligned with ABLM2_HUMAN | Q6H8Q1 from UniProtKB/Swiss-Prot  Length:611

    Alignment length:67
                                   554       564       574       584       594       604       
          ABLM2_HUMAN   545 EYKIYPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKKKALLF 611
               SCOP domains d2l3xa_ A: automated matches                                        SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhh............hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1--Exon 1.24b  PDB: A:4-30    Exon 1.25c  PDB: A:31-67              Transcript 1 (1)
           Transcript 1 (2) 1.2---------------------------------------------------------------- Transcript 1 (2)
                 2l3x A   1 QYKIYPYDSLIVTNRIRVKLPKDVDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKKKALLF  67
                                    10        20        30        40        50        60
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2L3X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2L3X)

(-) Gene Ontology  (8, 8)

NMR Structure(hide GO term definitions)
Chain A   (ABLM2_HUMAN | Q6H8Q1)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0030036    actin cytoskeleton organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
    GO:0007010    cytoskeleton organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ABLM2_HUMAN | Q6H8Q1: 1v6g 1wig

(-) Related Entries Specified in the PDB File

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