PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2L3X
Asym. Unit
Info
Asym.Unit (461 KB)
Biol.Unit 1 (24 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
VILLIN HEAD PIECE DOMAIN OF HUMAN ABLIM2
Authors
:
S. Bruton, M. Pfuhl
Date
:
24 Sep 10 (Deposition) - 07 Sep 11 (Release) - 07 Sep 11 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Actin Binding, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Bruton, M. Pfuhl
Solution Nmr Study Of The Actin Binding Domain Of Ablim2
To Be Published
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.22 (A:1-1)
Exon 1.23 (A:1-3)
Exon 1.24b (A:4-30)
Exon 1.25c (A:31-67)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.21/1.22
2: Boundary 1.22/1.23
3: Boundary 1.23/1.24b
4: Boundary 1.24b/1.25c
5: Boundary 1.25c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000341937
1d
ENSE00002025557
chr4:
8160481-8160407
75
ABLM2_HUMAN
1-4
4
0
-
-
1.2
ENST00000341937
2
ENSE00001798266
chr4:
8108364-8108221
144
ABLM2_HUMAN
4-52
49
0
-
-
1.3
ENST00000341937
3
ENSE00001651357
chr4:
8099009-8098826
184
ABLM2_HUMAN
52-113
62
0
-
-
1.4
ENST00000341937
4
ENSE00001645970
chr4:
8090011-8089896
116
ABLM2_HUMAN
113-152
40
0
-
-
1.5
ENST00000341937
5
ENSE00001741599
chr4:
8082529-8082403
127
ABLM2_HUMAN
152-194
43
0
-
-
1.6
ENST00000341937
6
ENSE00001673927
chr4:
8079448-8079355
94
ABLM2_HUMAN
194-225
32
0
-
-
1.8
ENST00000341937
8
ENSE00001735996
chr4:
8062781-8062694
88
ABLM2_HUMAN
226-255
30
0
-
-
1.9
ENST00000341937
9
ENSE00001080335
chr4:
8055973-8055915
59
ABLM2_HUMAN
255-274
20
0
-
-
1.10
ENST00000341937
10
ENSE00001080338
chr4:
8046968-8046891
78
ABLM2_HUMAN
275-300
26
0
-
-
1.12
ENST00000341937
12
ENSE00001080331
chr4:
8038022-8037876
147
ABLM2_HUMAN
301-349
49
0
-
-
1.14
ENST00000341937
14
ENSE00001080332
chr4:
8031503-8031383
121
ABLM2_HUMAN
350-390
41
0
-
-
1.16d
ENST00000341937
16d
ENSE00001337667
chr4:
8022030-8021929
102
ABLM2_HUMAN
390-424
35
0
-
-
1.17
ENST00000341937
17
ENSE00001136408
chr4:
8021398-8021345
54
ABLM2_HUMAN
424-442
19
0
-
-
1.19
ENST00000341937
19
ENSE00001136400
chr4:
8010829-8010777
53
ABLM2_HUMAN
442-459
18
0
-
-
1.20e
ENST00000341937
20e
ENSE00001492451
chr4:
8009924-8009786
139
ABLM2_HUMAN
460-506
47
0
-
-
1.21
ENST00000341937
21
ENSE00001278544
chr4:
7994654-7994593
62
ABLM2_HUMAN
506-526
21
0
-
-
1.22
ENST00000341937
22
ENSE00001278537
chr4:
7986620-7986566
55
ABLM2_HUMAN
527-545
19
1
A:1-1
1
1.23
ENST00000341937
23
ENSE00001772276
chr4:
7985281-7985274
8
ABLM2_HUMAN
545-547
3
1
A:1-3
3
1.24b
ENST00000341937
24b
ENSE00001278486
chr4:
7985071-7984991
81
ABLM2_HUMAN
548-574
27
1
A:4-30
27
1.25c
ENST00000341937
25c
ENSE00002068146
chr4:
7968830-7968029
802
ABLM2_HUMAN
575-611
37
1
A:31-67
37
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2l3xa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
VHP, Villin headpiece domain
(21)
Superfamily
:
VHP, Villin headpiece domain
(21)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2l3xa_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (461 KB)
Header - Asym.Unit
Biol.Unit 1 (24 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2L3X
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
