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(-) Description

Title :  SOLUTION NMR STRUCTURE OF DSY0195(21-82) PROTEIN FROM DESULFITOBACTERIUM HAFNIENSE. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET DHR8C
 
Authors :  Y. Yang, T. A. Ramelot, J. R. Cort, H. Wang, C. Ciccosanti, E. L. Foote, M. H. Janjua, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, M. A. Ke Northeast Structural Genomics Consortium (Nesg)
Date :  27 May 10  (Deposition) - 09 Jun 10  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Yabp Family, Desulfitobacterium Hafniense, Structural Genomics, Psi- 2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Yang, T. A. Ramelot, R. M. Mccarrick, S. Ni, E. A. Feldmann, J. R. Cort H. Wang, C. Ciccosanti, M. Jiang, H. Janjua, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, M. A. Kennedy
Combining Nmr And Epr Methods For Homodimer Protein Structure Determination.
J. Am. Chem. Soc. V. 132 11910 2010
PubMed-ID: 20698532  |  Reference-DOI: 10.1021/JA105080H

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3) PMGK
    Expression System Taxid: 469008
    Expression System Vector: PET 21-23C
    Fragment: SEQUENCE DATABASE RESIDUES 21-82
    Gene: DSY0195
    Organism Scientific: DESULFITOBACTERIUM HAFNIENSE
    Organism Taxid: 138119
    Strain: Y51

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2KYI)

(-) Sites  (0, 0)

(no "Site" information available for 2KYI)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2KYI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2KYI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2KYI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2KYI)

(-) Exons   (0, 0)

(no "Exon" information available for 2KYI)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:71
 aligned with Q251Q8_DESHY | Q251Q8 from UniProtKB/TrEMBL  Length:97

    Alignment length:71
                                    29        39        49        59        69        79        89 
         Q251Q8_DESHY    20 MDNRQFLSLTGVSKVQSFDPKEILLETIQGVLSIKGEKLGIKHLDLKAGQVEVEGLIDALVYPRNSGSRQN  90
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.eeeeeeee..eeeeee..eeeeeeeeeeee....hhh.eeeeeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 2kyi A  20 MDNRQFLSLTGVSKVQSFDPKEILLETIQGVLSIKGEKLGIKHLDLKAGQVEVEGLIDALVYPLEHHHHHH  90
                                    29        39        49        59        69        79        89 


Chain B from PDB  Type:PROTEIN  Length:71
 aligned with Q251Q8_DESHY | Q251Q8 from UniProtKB/TrEMBL  Length:97

    Alignment length:71
                                    29        39        49        59        69        79        89 
         Q251Q8_DESHY    20 MDNRQFLSLTGVSKVQSFDPKEILLETIQGVLSIKGEKLGIKHLDLKAGQVEVEGLIDALVYPRNSGSRQN  90
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
           Pfam domains (1) -YabP-2kyiB01 B:92-153                                         -------- Pfam domains (1)
           Pfam domains (2) -YabP-2kyiB02 B:92-153                                         -------- Pfam domains (2)
         Sec.struct. author ....eeeeee.eeeeeeee..eeeeee..eeeeeeeeeee.........eeeeeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 2kyi B  91 MDNRQFLSLTGVSKVQSFDPKEILLETIQGVLSIKGEKLGIKHLDLKAGQVEVEGLIDALVYPLEHHHHHH 161
                                   100       110       120       130       140       150       160
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2KYI)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2KYI)

(-) Pfam Domains  (1, 2)

NMR Structure
(-)
Clan: no clan defined [family: YabP] (2)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 2KYI)

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  2kyi
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q251Q8_DESHY | Q251Q8: 2ks0 3ipf

(-) Related Entries Specified in the PDB File

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