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(-) Description

Title :  SOLUTION STRUCTURE OF HUMAN SUPERVILLIN HEADPIECE, MINIMIZED AVERAGE
 
Authors :  J. W. Brown, V. Didem, C. Mcknight
Date :  11 Jul 08  (Deposition) - 14 Jul 09  (Release) - 27 Oct 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Supervillin, Svhp, Hp, Headpiece, Villin, Nmr, Archvillin, Actin Capping, Actin-Binding, Alternative Splicing, Calcium, Cytoplasm, Cytoskeleton, Membrane, Phosphoprotein, Polymorphism, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. W. Brown, D. Vardar-Ulu, C. J. Mcknight
How To Arm A Supervillin: Designing F-Actin Binding Activity Into Supervillin Headpiece.
J. Mol. Biol. V. 393 608 2009
PubMed-ID: 19683541  |  Reference-DOI: 10.1016/J.JMB.2009.08.018
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SUPERVILLIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System VectorPSVHP(PET24A)
    FragmentUNP RESIDUES 2149-2214, HP
    GeneSVIL
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymARCHVILLIN, P205/P250

 Structural Features

(-) Chains, Units

  
NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2K6N)

(-) Sites  (0, 0)

(no "Site" information available for 2K6N)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2K6N)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HPPS51089 Headpiece (HP) domain profile.SVIL_HUMAN2151-2214  1A:13-76

(-) Exons   (0, 0)

(no "Exon" information available for 2K6N)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:67
 aligned with SVIL_HUMAN | O95425 from UniProtKB/Swiss-Prot  Length:2214

    Alignment length:67
                                  2157      2167      2177      2187      2197      2207       
          SVIL_HUMAN   2148 VLAKLCKTIYPLADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF 2214
               SCOP domains d2k6na_ A: automated matches                                        SCOP domains
               CATH domains 2k6nA00 A:10-76 Villin Headpiece Domain; Chain A                    CATH domains
               Pfam domains -------------------------------VHP-2k6nA01 A:41-76                  Pfam domains
         Sec.struct. author ..........hhhhhhh................hhhhhhhhh..hhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---HP  PDB: A:13-76 UniProt: 2151-2214                              PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                2k6n A   10 MLAKLCKTIYPLADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGLF   76
                                    19        29        39        49        59        69       

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (21, 21)

NMR Structure(hide GO term definitions)
Chain A   (SVIL_HUMAN | O95425)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0051015    actin filament binding    Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007010    cytoskeleton organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures.
    GO:0032467    positive regulation of cytokinesis    Any process that activates or increases the frequency, rate or extent of the division of the cytoplasm of a cell, and its separation into two daughter cells.
    GO:0007519    skeletal muscle tissue development    The developmental sequence of events leading to the formation of adult skeletal muscle tissue. The main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0032154    cleavage furrow    The cleavage furrow is a plasma membrane invagination at the cell division site. The cleavage furrow begins as a shallow groove and eventually deepens to divide the cytoplasm.
    GO:0043034    costamere    Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0071437    invadopodium    A cell projection that emerges from the ECM-facing surface of a cell, is enriched in actin and associated cytoskeletal proteins, and displays localized proteolytic activity toward the substrate.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0036449    microtubule minus-end    The end of a microtubule that does not preferentially grow (polymerize).
    GO:0030496    midbody    A thin cytoplasmic bridge formed between daughter cells at the end of cytokinesis. The midbody forms where the contractile ring constricts, and may persist for some time before finally breaking to complete cytokinesis.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0002102    podosome    An actin-rich adhesion structure characterized by formation upon cell substrate contact and localization at the substrate-attached part of the cell, contain an F-actin-rich core surrounded by a ring structure containing proteins such as vinculin and talin, and have a diameter of 0.5 mm.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SVIL_HUMAN | O954252k6m

(-) Related Entries Specified in the PDB File

1qqv SOLUTION STRUCTURE OF THE HEADPIECE DOMAIN OF CHICKEN VILLIN
1qzp NMR STRUCTURE OF THE HUMAN DEMATIN HEADPIECE DOMAIN
1ujs SOLUTION STRUCTURE OF THE VILLIN HEADPIECE DOMAIN OF HUMAN ACTIN-BINDING LIM PROTEIN HOMOLOG
1unc SOLUTION STRUCTURE OF THE HUMAN VILLIN C-TERMINAL HEADPIECE SUBDOMAIN
1und SOLUTION STRUCTURE OF THE HUMAN ADVILLIN C-TERMINAL SUBDOMAIN
1vii THERMOSTABLE SUBDOMAIN FROM CHICKEN VILLIN HEADPIECE, NMR, MINIMIZED AVERAGE STRUCTURE
1wy3 CHICKEN VILLIN SUBDOMAIN HP-35, K65(NLE), N68H, PH 7.0
1wy4 CHICKEN VILLIN SUBDOMAIN HP-35, K65(NLE), N68H, PH 5.1
1yrf CHICKEN VILLIN SUBDOMAIN HP-35, N68H, PH 6.7
1yri CHICKEN VILLIN SUBDOMAIN HP-35, N68H, PH 6.4
1yu5 CRYSTAL STRUCTURE OF THE HEADPIECE DOMAIN OF CHICKEN VILLIN
1yu7 CRYSTAL STRUCTURE OF THE W64A MUTANT OF VILLIN HEADPIECE
1yu8 CRYSTAL STRUCTURE OF THE R37A MUTANT OF VILLIN HEADPIECE
1zv6 NMR STRUCTURE OF THE HUMAN DEMATIN HEADPIECE S74E MUTANT
2jm0 SOLUTION STRUCTURE OF CHICKEN VILLIN HEADPIECE SUBDOMAIN CONTAINING A FLUORINATED SIDECHAIN IN THE CORE
2k6m SOLUTION STRUCTURE OF HUMAN SUPERVILLIN HEADPIECE
2ppz NMR SOLUTION STRUCTURE OF THE VILLIN HEADPIECE MUTANT G34L