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(-) Description

Title :  SOLUTION STRUCTURE OF PROTEIN HP0495 FROM H. PYLORI; NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PT2; ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS TARGET HP0488
 
Authors :  A. Gutmanas, A. Lemak, A. Yee, M. Karra, S. Srisailam, A. Semesi, C. H. Ar Northeast Structural Genomics Consortium (Nesg), Ontario Cen Structural Proteomics (Ocsp)
Date :  19 Mar 07  (Deposition) - 03 Apr 07  (Release) - 18 Jan 12  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Hp0495, Structural Genomics, Non-Uniform Sampling, Abacus, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Ontario Centre For Structural Proteomics, Ocsp, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Gutmanas, A. Lemak, A. Yee, M. Karra, S. Srisailam, A. Semesi, C. H. Arrowsmith
Solution Structure Of Protein Hp0495 From H. Pylori
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN HP_0495
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3 (GOLD)
    Expression System Taxid: 562
    Expression System Vector: P11
    Expression System Vector Type: VECTOR
    Gene: HP0495
    Organism Scientific: HELICOBACTER PYLORI
    Organism Taxid: 210

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2JOQ)

(-) Sites  (0, 0)

(no "Site" information available for 2JOQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JOQ)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Tyr A:15 -Pro A:16

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2JOQ)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:91
 aligned with Y495_HELPY | O25237 from UniProtKB/Swiss-Prot  Length:86

    Alignment length:91
                               1                                                                                   86  
                               |     7        17        27        37        47        57        67        77        |- 
            Y495_HELPY    - ---MPSDSKKPTIIYPCLWDYRVIMTTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQTL--  -
               SCOP domains ---d2joqa1 A:4-89 Hypothetical protein HP0495                                            -- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------DUF493-2joqA01 A:9-89                                                            -- Pfam domains
         Sec.struct. author ................eeeeeeeee.....hhhhhhhhh....eeeeeeee......eeeeeeeee.hhhhhhhhhhhhh....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  2joq A  1 QGHMPSDSKKPTIIYPCLWDYRVIMTTKDTSTLKELLETYQRPFKLEFKNTSKNAKFYSFNVSMEVSNESERNEIFQKISQLDKVVQTLGS 91
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2JOQ)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: ACT (34)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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  Cis Peptide Bonds
    Tyr A:15 - Pro A:16   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Y495_HELPY | O25237: 2h9z

(-) Related Entries Specified in the PDB File

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