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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF HUMAN SHORT-BRANCHED CHAIN ACYL-COA DEHYDROGENASE (ACADSB)

Authors :   A. C. W. Pike, V. Hozjan, C. Smee, F. H. Niesen, K. L. Kavanagh, C. Umeano, A. P. Turnbull, F. Von Delft, J. Weigelt, A. Edwards, C. H. Arrowsmith M. Sundstrom, U. Oppermann

Date :   28 Feb 07 (Deposition) - 03 Apr 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Mitochondrion, Oxidoreductase, Transit Peptide, Fatty Acid Metabolism, Fad, Flavoprotein, Disease Mutation, Lipid Metabolism (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. C. W. Pike, V. Hozjan, C. Smee, F. H. Niesen, K. L. Kavanagh, C. Umeano A. P. Turnbull, F. Von Delft, J. Weigelt, A. Edwards, C. H. Arrowsmith M. Sundstrom, U. Oppermann
Crystal Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase
To Be Published
PubMed: search

Molecule 1 - SHORT/BRANCHED CHAIN SPECIFIC ACYL-COA DEHYDROGENASE
	Chains	:	A, B, C, D
	EC Number	:	1.3.99.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC28-BSA4
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Fragment	:	RESIDUES 52-432
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	ACYL-COA DEHYDROGENASE, SBCAD, 2-METHYL BRANCHED CHAIN ACYL-COA DEHYDROGENASE, 2-MEBCAD, 2-METHYLBUTYRYL-COENZYME A DEHYDROGENASE, 2-METHYLBUTYRYL-COA DEHYDROGENASE

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 25)

No.	Name	Count	Type	Full Name
1	CL	10	Ligand/Ion	CHLORIDE ION
2	COS	4	Ligand/Ion	COENZYME A PERSULFIDE
3	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
4	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE

Asymmetric Unit (25, 25)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:108 , ARG A:151	BINDING SITE FOR RESIDUE CL A1436
02	AC2	SOFTWARE	HIS A:213 , SER A:259	BINDING SITE FOR RESIDUE CL A1437
03	AC3	SOFTWARE	ASP B:108 , ARG B:151	BINDING SITE FOR RESIDUE CL B1436
04	AC4	SOFTWARE	HIS B:213 , SER B:259	BINDING SITE FOR RESIDUE CL B1437
05	AC5	SOFTWARE	TYR A:373 , TYR B:373	BINDING SITE FOR RESIDUE CL B1438
06	AC6	SOFTWARE	ASP C:108 , ARG C:151	BINDING SITE FOR RESIDUE CL C1436
07	AC7	SOFTWARE	SER C:259 , HOH C:2141	BINDING SITE FOR RESIDUE CL C1437
08	AC8	SOFTWARE	ASP D:108 , ARG D:151	BINDING SITE FOR RESIDUE CL D1439
09	AC9	SOFTWARE	HIS D:213 , SER D:259	BINDING SITE FOR RESIDUE CL D1440
10	BC1	SOFTWARE	TYR C:373 , TYR D:373	BINDING SITE FOR RESIDUE CL D1441
11	BC2	SOFTWARE	PHE A:174 , LEU A:176 , SER A:177 , GLY A:182 , SER A:183 , TRP A:207 , SER A:209 , THR A:260 , ILE A:409 , ILE A:412 , ALA A:416 , ASN A:418 , ILE A:419 , ASN A:422 , COS A:1434 , HOH A:2182 , HOH A:2195 , HOH A:2196 , HOH A:2197 , HOH A:2198 , HOH A:2199 , GLN B:330 , ARG C:319 , GLN C:321 , PHE C:322 , LEU C:326 , PHE C:329 , LEU C:332 , GLU C:387 , TRP C:388 , GLY C:391 , HOH C:2203	BINDING SITE FOR RESIDUE FAD A1433
12	BC3	SOFTWARE	SER A:183 , SER A:185 , TYR A:229 , LYS A:230 , TYR A:283 , ILE A:287 , LEU A:290 , ASN A:291 , ARG A:294 , TYR A:413 , GLU A:414 , GLY A:415 , ILE A:419 , FAD A:1433 , HOH A:2062 , HOH A:2185 , HOH A:2201 , HOH A:2202 , PHE C:322	BINDING SITE FOR RESIDUE COS A1434
13	BC4	SOFTWARE	VAL A:131 , PRO A:399 , TYR A:403 , HOH A:2203 , HOH A:2204	BINDING SITE FOR RESIDUE EDO A1435
14	BC5	SOFTWARE	GLN A:330 , PHE B:174 , LEU B:176 , SER B:177 , GLY B:182 , SER B:183 , TRP B:207 , SER B:209 , LYS B:252 , THR B:260 , ILE B:409 , ILE B:412 , ALA B:416 , ASN B:418 , ASN B:422 , COS B:1434 , HOH B:2181 , HOH B:2193 , HOH B:2194 , HOH B:2195 , HOH B:2196 , HOH B:2197 , HOH B:2198 , ARG D:319 , GLN D:321 , PHE D:322 , LEU D:326 , PHE D:329 , LEU D:332 , GLU D:387 , TRP D:388 , GLY D:391 , HOH D:2227	BINDING SITE FOR RESIDUE FAD B1433
15	BC6	SOFTWARE	SER B:183 , SER B:185 , PHE B:186 , TYR B:229 , TYR B:283 , ILE B:287 , LEU B:290 , ASN B:291 , ARG B:294 , TYR B:413 , GLU B:414 , GLY B:415 , ILE B:419 , FAD B:1433 , HOH B:2200 , HOH B:2201 , HOH B:2202 , PHE D:322	BINDING SITE FOR RESIDUE COS B1434
16	BC7	SOFTWARE	ARG B:256 , HOH B:2203 , HOH B:2204 , ARG D:256 , HOH D:2030 , HOH D:2231	BINDING SITE FOR RESIDUE EDO B1435
17	BC8	SOFTWARE	ARG A:319 , GLN A:321 , PHE A:322 , LEU A:326 , PHE A:329 , LEU A:332 , GLU A:387 , TRP A:388 , GLY A:391 , HOH A:2166 , PHE C:174 , LEU C:176 , SER C:177 , GLY C:182 , SER C:183 , TRP C:207 , SER C:209 , THR C:260 , ILE C:409 , ILE C:412 , ALA C:416 , ASN C:418 , ASN C:422 , COS C:1434 , HOH C:2113 , HOH C:2226 , HOH C:2227 , HOH C:2228 , HOH C:2229 , HOH C:2230 , GLN D:330	BINDING SITE FOR RESIDUE FAD C1433
18	BC9	SOFTWARE	SER C:183 , SER C:185 , PHE C:186 , TYR C:229 , LYS C:230 , TYR C:283 , ILE C:287 , ASN C:291 , ARG C:294 , TYR C:413 , GLU C:414 , GLY C:415 , ILE C:419 , FAD C:1433 , HOH C:2089 , HOH C:2220 , HOH C:2221 , HOH C:2231 , HOH C:2232 , HOH C:2233 , HOH C:2234	BINDING SITE FOR RESIDUE COS C1434
19	CC1	SOFTWARE	VAL C:131 , PRO C:399 , TYR C:403 , HOH C:2235 , HOH C:2236	BINDING SITE FOR RESIDUE EDO C1435
20	CC2	SOFTWARE	ARG B:319 , PHE B:322 , LEU B:326 , PHE B:329 , LEU B:332 , GLU B:387 , TRP B:388 , GLY B:391 , HOH B:2165 , GLN C:330 , PHE D:174 , LEU D:176 , SER D:177 , GLY D:182 , SER D:183 , TRP D:207 , ILE D:208 , SER D:209 , ILE D:409 , ILE D:412 , ALA D:416 , ASN D:418 , ILE D:419 , ASN D:422 , COS D:1434 , HOH D:2241 , HOH D:2243 , HOH D:2255 , HOH D:2256 , HOH D:2257 , HOH D:2258 , HOH D:2259	BINDING SITE FOR RESIDUE FAD D1433
21	CC3	SOFTWARE	SER D:183 , SER D:185 , PHE D:186 , TYR D:229 , TYR D:283 , ILE D:287 , LEU D:290 , ASN D:291 , ARG D:294 , ILE D:364 , TYR D:413 , GLU D:414 , GLY D:415 , ILE D:419 , FAD D:1433 , EDO D:1437 , HOH D:2097 , HOH D:2261 , HOH D:2262 , HOH D:2263 , HOH D:2264 , HOH D:2265 , HOH D:2267	BINDING SITE FOR RESIDUE COS D1434
22	CC4	SOFTWARE	LYS C:88 , GLN D:158 , TYR D:162 , LEU D:236 , ALA D:273 , ASN D:274	BINDING SITE FOR RESIDUE EDO D1435
23	CC5	SOFTWARE	LYS C:91 , VAL D:237 , ASP D:238 , THR D:241 , ASN D:274	BINDING SITE FOR RESIDUE EDO D1436
24	CC6	SOFTWARE	PHE B:322 , ILE D:419 , ASN D:422 , COS D:1434 , HOH D:2267	BINDING SITE FOR RESIDUE EDO D1437
25	CC7	SOFTWARE	VAL D:131 , PRO D:399 , TYR D:403 , HOH D:2269	BINDING SITE FOR RESIDUE EDO D1438

(no "SS Bond" information available for 2JIF)

(no "Cis Peptide Bond" information available for 2JIF)

Asymmetric/Biological Unit (4, 16)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_014749	S	209	G	ACDSB_HUMAN	Polymorphism	1799823	A/B/C/D	S	209	G
2	UniProt	VAR_013010	L	255	F	ACDSB_HUMAN	Disease (SBCADD)	137852649	A/B/C/D	L	255	F
3	UniProt	VAR_048178	I	316	V	ACDSB_HUMAN	Polymorphism	1131430	A/B/C/D	I	316	V
4	UniProt	VAR_048179	E	376	G	ACDSB_HUMAN	Polymorphism	12357783	A/B/C/D	E	376	G

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ACYL_COA_DH_1	PS00072	Acyl-CoA dehydrogenases signature 1.	ACDSB_HUMAN	175-187	4	A:175-187 B:175-187 C:175-187 D:175-187
2	ACYL_COA_DH_2	PS00073	Acyl-CoA dehydrogenases signature 2.	ACDSB_HUMAN	387-406	4	A:387-406 B:387-406 C:387-406 D:387-406

Asymmetric/Biological Unit (10, 40)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000358776	1	ENSE00001448198	chr10:124768532-124768587	56	ACDSB_HUMAN	1-14	14	0	-	-
1.3a	ENST00000358776	3a	ENSE00001205631	chr10:124793872-124794031	160	ACDSB_HUMAN	15-68	54	4	A:52-68 B:56-68 C:56-68 D:52-68	17 13 13 17
1.4	ENST00000358776	4	ENSE00001205603	chr10:124797263-124797363	101	ACDSB_HUMAN	68-101	34	4	A:68-101 B:68-101 C:68-101 D:68-101	34 34 34 34
1.5b	ENST00000358776	5b	ENSE00002174786	chr10:124799982-124800188	207	ACDSB_HUMAN	102-170	69	4	A:102-170 B:102-170 C:102-170 D:102-170	69 69 69 69
1.6	ENST00000358776	6	ENSE00001613421	chr10:124800725-124800895	171	ACDSB_HUMAN	171-227	57	4	A:171-227 B:171-227 C:171-227 D:171-227	57 57 57 57
1.7b	ENST00000358776	7b	ENSE00001747360	chr10:124802562-124802687	126	ACDSB_HUMAN	228-269	42	4	A:228-269 B:228-269 C:228-269 D:228-269	42 42 42 42
1.8a	ENST00000358776	8a	ENSE00001708357	chr10:124803909-124804001	93	ACDSB_HUMAN	270-300	31	4	A:270-300 B:270-300 C:270-300 D:270-300	31 31 31 31
1.9b	ENST00000358776	9b	ENSE00001724008	chr10:124806725-124806814	90	ACDSB_HUMAN	301-330	30	4	A:301-330 B:301-330 C:301-330 D:301-330	30 30 30 30
1.10	ENST00000358776	10	ENSE00001661123	chr10:124810565-124810702	138	ACDSB_HUMAN	331-376	46	4	A:331-376 B:331-376 C:331-376 D:331-376	46 46 46 46
1.11	ENST00000358776	11	ENSE00001766561	chr10:124812577-124812676	100	ACDSB_HUMAN	377-410	34	4	A:377-410 B:377-410 C:377-410 D:377-410	34 34 34 34
1.12	ENST00000358776	12	ENSE00001399396	chr10:124813211-124817827	4617	ACDSB_HUMAN	410-432	23	4	A:410-432 B:410-432 C:410-432 D:410-432	23 23 23 23

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:381
 aligned with ACDSB_HUMAN | P45954 from UniProtKB/Swiss-Prot  Length:432

    Alignment length:381
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431 
          ACDSB_HUMAN    52 APLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY 432
               SCOP domains d2jifa1 A:52-279 automated matches                                                                                                                                                                                                  d2jifa2 A:280-432 automated matches                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------2jifA02 A:170-278 Butyryl-CoA Dehydrogenase, subunit A, domain 2                                             2jifA03 A:279-432 Butyryl-CoA Dehydrogenase, subunit A, domain 3                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhh.......hhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee........hhhhh..eeeee..eeeeeeeeeeee......eeeeeee.hhhhhhh.eeeeeee.....eee.............eeeeeeeeeeee...ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------F------------------------------------------------------------V-----------------------------------------------------------G-------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------ACYL_COA_DH_1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACYL_COA_DH_2       -------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a        ---------------------------------Exon 1.5b  PDB: A:102-170 UniProt: 102-170                           Exon 1.6  PDB: A:171-227 UniProt: 171-227                Exon 1.7b  PDB: A:228-269 UniProt: 228-269Exon 1.8a  PDB: A:270-300      Exon 1.9b  PDB: A:301-330     Exon 1.10  PDB: A:331-376 UniProt: 331-376    Exon 1.11  PDB: A:377-410         ---------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.4  PDB: A:68-101           --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12               Transcript 1 (2)
                 2jif A  52 APLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY 432
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431

Chain B from PDB  Type:PROTEIN  Length:377
 aligned with ACDSB_HUMAN | P45954 from UniProtKB/Swiss-Prot  Length:432

    Alignment length:377
                                    65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       
          ACDSB_HUMAN    56 TFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY 432
               SCOP domains d2jifb1 B:56-279 automated matches                                                                                                                                                                                              d2jifb2 B:280-432 automated matches                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------2jifB02 B:170-278 Butyryl-CoA Dehydrogenase, subunit A, domain 2                                             2jifB03 B:279-432 Butyryl-CoA Dehydrogenase, subunit A, domain 3                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhh.......hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee........hhhhh..eeeee..eeeeeeeeeeee......eeeeeee.hhhhhhh.eeeeeee.....eee.............eeeeeeeeeeee...ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------F------------------------------------------------------------V-----------------------------------------------------------G-------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------ACYL_COA_DH_1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACYL_COA_DH_2       -------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a    ---------------------------------Exon 1.5b  PDB: B:102-170 UniProt: 102-170                           Exon 1.6  PDB: B:171-227 UniProt: 171-227                Exon 1.7b  PDB: B:228-269 UniProt: 228-269Exon 1.8a  PDB: B:270-300      Exon 1.9b  PDB: B:301-330     Exon 1.10  PDB: B:331-376 UniProt: 331-376    Exon 1.11  PDB: B:377-410         ---------------------- Transcript 1 (1)
           Transcript 1 (2) ------------Exon 1.4  PDB: B:68-101           --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12               Transcript 1 (2)
                 2jif B  56 TFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY 432
                                    65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425

Chain C from PDB  Type:PROTEIN  Length:377
 aligned with ACDSB_HUMAN | P45954 from UniProtKB/Swiss-Prot  Length:432

    Alignment length:377
                                    65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       
          ACDSB_HUMAN    56 TFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY 432
               SCOP domains d2jifc1 C:56-279 automated matches                                                                                                                                                                                              d2jifc2 C:280-432 automated matches                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------2jifC02 C:170-278 Butyryl-CoA Dehydrogenase, subunit A, domain 2                                             2jifC03 C:279-432 Butyryl-CoA Dehydrogenase, subunit A, domain 3                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhh.......hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee........hhhhh..eeeee..eeeeeeeeeeee......eeeeeee.hhhhhhh.eeeeeee.....eee.............eeeeeeeeeeee...ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------F------------------------------------------------------------V-----------------------------------------------------------G-------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------ACYL_COA_DH_1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACYL_COA_DH_2       -------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a    ---------------------------------Exon 1.5b  PDB: C:102-170 UniProt: 102-170                           Exon 1.6  PDB: C:171-227 UniProt: 171-227                Exon 1.7b  PDB: C:228-269 UniProt: 228-269Exon 1.8a  PDB: C:270-300      Exon 1.9b  PDB: C:301-330     Exon 1.10  PDB: C:331-376 UniProt: 331-376    Exon 1.11  PDB: C:377-410         ---------------------- Transcript 1 (1)
           Transcript 1 (2) ------------Exon 1.4  PDB: C:68-101           --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12               Transcript 1 (2)
                 2jif C  56 TFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY 432
                                    65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425

Chain D from PDB  Type:PROTEIN  Length:381
 aligned with ACDSB_HUMAN | P45954 from UniProtKB/Swiss-Prot  Length:432

    Alignment length:381
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431 
          ACDSB_HUMAN    52 APLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY 432
               SCOP domains d2jifd1 D:52-279 automated matches                                                                                                                                                                                                  d2jifd2 D:280-432 automated matches                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------2jifD02 D:170-278 Butyryl-CoA Dehydrogenase, subunit A, domain 2                                             2jifD03 D:279-432 Butyryl-CoA Dehydrogenase, subunit A, domain 3                                                                                           CATH domains
           Pfam domains (1) ------Acyl-CoA_dh_N-2jifD09 D:58-170                                                                                   --Acyl-CoA_dh_M-2jifD05 D:173-224                     -------------------------------------------------------Acyl-CoA_dh_1-2jifD01 D:280-428                                                                                                                      ---- Pfam domains (1)
           Pfam domains (2) ------Acyl-CoA_dh_N-2jifD10 D:58-170                                                                                   --Acyl-CoA_dh_M-2jifD06 D:173-224                     -------------------------------------------------------Acyl-CoA_dh_1-2jifD02 D:280-428                                                                                                                      ---- Pfam domains (2)
           Pfam domains (3) ------Acyl-CoA_dh_N-2jifD11 D:58-170                                                                                   --Acyl-CoA_dh_M-2jifD07 D:173-224                     -------------------------------------------------------Acyl-CoA_dh_1-2jifD03 D:280-428                                                                                                                      ---- Pfam domains (3)
           Pfam domains (4) ------Acyl-CoA_dh_N-2jifD12 D:58-170                                                                                   --Acyl-CoA_dh_M-2jifD08 D:173-224                     -------------------------------------------------------Acyl-CoA_dh_1-2jifD04 D:280-428                                                                                                                      ---- Pfam domains (4)
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhh.......hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee........hhhhh..eeeee..eeeeeeeeeeee......eeeeeee.hhhhhhh.eeeeeee.....eee.............eeeeeeeeeeee...ee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------------------F------------------------------------------------------------V-----------------------------------------------------------G-------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------ACYL_COA_DH_1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACYL_COA_DH_2       -------------------------- PROSITE
           Transcript 1 (1) Exon 1.3a        ---------------------------------Exon 1.5b  PDB: D:102-170 UniProt: 102-170                           Exon 1.6  PDB: D:171-227 UniProt: 171-227                Exon 1.7b  PDB: D:228-269 UniProt: 228-269Exon 1.8a  PDB: D:270-300      Exon 1.9b  PDB: D:301-330     Exon 1.10  PDB: D:331-376 UniProt: 331-376    Exon 1.11  PDB: D:377-410         ---------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------Exon 1.4  PDB: D:68-101           --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.12               Transcript 1 (2)
                 2jif D  52 APLQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQLNTIAKHIDAEY 432
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Bromodomain-like (339)

Superfamily: Acyl-CoA dehydrogenase C-terminal domain-like (61)

Family: automated matches (29)

Protein domain: automated matches (29)

Human (Homo sapiens) [TaxId: 9606] (4)

1a	d2jifa2	A:280-432
1b	d2jifc2	C:280-432
1c	d2jifd2	D:280-432
1d	d2jifb2	B:280-432

Class: Multi-domain proteins (alpha and beta) (2421)

Fold: Acyl-CoA dehydrogenase NM domain-like (61)

Superfamily: Acyl-CoA dehydrogenase NM domain-like (61)

Family: automated matches (26)

Protein domain: automated matches (26)

Human (Homo sapiens) [TaxId: 9606] (2)

2a	d2jifa1	A:52-279
2b	d2jifb1	B:56-279
2c	d2jifc1	C:56-279
2d	d2jifd1	D:52-279

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Butyryl-CoA Dehydrogenase, subunit A; domain 3 (76)

Homologous Superfamily: Butyryl-CoA Dehydrogenase, subunit A, domain 3 (37)

Human (Homo sapiens) (13)

1a	2jifA03	A:279-432
1b	2jifB03	B:279-432
1c	2jifC03	C:279-432
1d	2jifD03	D:279-432

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Butyryl-CoA Dehydrogenase, subunit A; domain 2 (35)

Homologous Superfamily: Butyryl-CoA Dehydrogenase, subunit A, domain 2 (35)

Human (Homo sapiens) (14)

2a	2jifA02	A:170-278
2b	2jifB02	B:170-278
2c	2jifC02	C:170-278
2d	2jifD02	D:170-278

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Acyl-CoA_dh (32)

Family: Acyl-CoA_dh_1 (24)

Homo sapiens (Human) (10)

1a	Acyl-CoA_dh_1-2jifD01	D:280-428
1b	Acyl-CoA_dh_1-2jifD02	D:280-428
1c	Acyl-CoA_dh_1-2jifD03	D:280-428
1d	Acyl-CoA_dh_1-2jifD04	D:280-428

Clan: no clan defined [family: Acyl-CoA_dh_M] (24)

Family: Acyl-CoA_dh_M (24)

Homo sapiens (Human) (10)

2a	Acyl-CoA_dh_M-2jifD05	D:173-224
2b	Acyl-CoA_dh_M-2jifD06	D:173-224
2c	Acyl-CoA_dh_M-2jifD07	D:173-224
2d	Acyl-CoA_dh_M-2jifD08	D:173-224

Clan: no clan defined [family: Acyl-CoA_dh_N] (23)

Family: Acyl-CoA_dh_N (23)

Homo sapiens (Human) (10)

3a	Acyl-CoA_dh_N-2jifD09	D:58-170
3b	Acyl-CoA_dh_N-2jifD10	D:58-170
3c	Acyl-CoA_dh_N-2jifD11	D:58-170
3d	Acyl-CoA_dh_N-2jifD12	D:58-170

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (ACDSB_HUMAN | P45954)

molecular function
	GO:0003995	acyl-CoA dehydrogenase activity	Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0000062	fatty-acyl-CoA binding	Interacting selectively and non-covalently with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
	GO:0052890	oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a flavin.
biological process
	GO:0009083	branched-chain amino acid catabolic process	The chemical reactions and pathways resulting in the breakdown of amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
	GO:0033539	fatty acid beta-oxidation using acyl-CoA dehydrogenase	A fatty acid beta-oxidation pathway in which the initial step of each oxidation cycle, which converts an acyl-CoA to a trans-2-enoyl-CoA, is catalyzed by acyl-CoA dehydrogenase; the electrons removed by oxidation pass through the respiratory chain to oxygen and leave H2O as the product. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0055088	lipid homeostasis	Any process involved in the maintenance of an internal steady state of lipid within an organism or cell.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005759	mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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	2jif
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	ACDSB_HUMAN \| P45954
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	1.3.99.-
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(no "Entries Sharing at Least One Protein Chain" available for 2JIF)

(no "Related Entries Specified in the PDB File" available for 2JIF)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 25)

Sites (25, 25)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (4, 16)

PROSITE Motifs (2, 8)

Exons (10, 40)

Sequences/Alignments

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SCOP Domains (2, 8)

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Pfam Domains (3, 12)

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