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(-) Description

Title :  CRYSTALLOGRAPHIC STRUCTURE OF HUMAN C1Q GLOBULAR HEADS (P1)
 
Authors :  H. Paidassi, P. Tacnet-Delorme, V. Garlatti, C. Darnault, B. Ghebrehiwet, C. Gaboriaud, G. J. Arlaud, P. Frachet
Date :  09 Feb 07  (Deposition) - 19 Feb 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Polymorphism, Glycoprotein, Phagocytosis, Disease Mutation, Complement Pathway, Immune System, Cell Surface Molecule, Pyrrolidone Carboxylic Acid, Hydroxylation, Innate Immunity, Immune Response, Collagen, Tolerance, Apopotosis, Complement (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Paidassi, P. Tacnet-Delorme, V. Garlatti, C. Darnault, B. Ghebrehiwet, C. Gaboriaud, G. J. Arlaud, P. Frachet
C1Q Binds Phosphatidylserine And Likely Acts As A Multiligand-Bridging Molecule In Apoptotic Cell Recognition.
J. Immunol. V. 180 2329 2008
PubMed-ID: 18250442

(-) Compounds

Molecule 1 - COMPLEMENT C1Q SUBCOMPONENT SUBUNIT A
    ChainsA, D
    FragmentC-TERMINAL GLOBULAR REGION, RESIDUES 112-245
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymC1Q CHAIN A
 
Molecule 2 - COMPLEMENT C1Q SUBCOMPONENT SUBUNIT B
    ChainsB, E
    FragmentC TERMINAL GLOBULAR DOMAIN, RESIDUES 116-251
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymC1Q CHAIN B
 
Molecule 3 - COMPLEMENT C1Q SUBCOMPONENT SUBUNIT C
    ChainsC, F
    FragmentC TERMINAL GLOBULAR DOMAIN, RESIDUES 115-245
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymC1Q CHAIN C
    SyntheticYES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)ABC   
Biological Unit 2 (1x)   DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:177 , ASP B:172 , TYR B:173 , GLN B:179 , HOH B:2008BINDING SITE FOR RESIDUE CA B1224
2AC2SOFTWAREGLN D:177 , HOH D:2017 , ASP E:172 , TYR E:173 , GLN E:179BINDING SITE FOR RESIDUE CA E1224

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:150 -A:168
2B:154 -B:171
3C:151 -C:165
4D:150 -D:168
5E:154 -E:171
6F:151 -F:165

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2JG9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 2)

Asymmetric Unit (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035551A123TC1QB_HUMANUnclassified776292843B/EA96T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035551A123TC1QB_HUMANUnclassified776292843BA96T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035551A123TC1QB_HUMANUnclassified776292843EA96T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JG9)

(-) Exons   (3, 6)

Asymmetric Unit (3, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003149332aENSE00001464096chr1:22979474-22979796323C1QB_HUMAN-00--
1.4ENST000003149334ENSE00001273267chr1:22985933-22986136204C1QB_HUMAN1-63630--
1.5cENST000003149335cENSE00001210122chr1:22987305-22988031727C1QB_HUMAN63-2531912B:92-224
E:92-224
133
133

2.1aENST000003746401aENSE00001464107chr1:22970123-2297020785C1QC_HUMAN-00--
2.2ENST000003746402ENSE00001464106chr1:22970504-22970697194C1QC_HUMAN1-61610--
2.3bENST000003746403bENSE00001542062chr1:22973720-22974603884C1QC_HUMAN61-2451852C:89-217
F:89-217
129
129

3.1ENST000003746421ENSE00001413929chr1:22962999-22963195197C1QA_HUMAN-00--
3.3bENST000003746423bENSE00001464114chr1:22964103-22964272170C1QA_HUMAN1-55550--
3.4cENST000003746424cENSE00001548747chr1:22965326-22966101776C1QA_HUMAN55-2451912A:90-223
D:90-223
134
134

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:134
 aligned with C1QA_HUMAN | P02745 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:134
                                   121       131       141       151       161       171       181       191       201       211       221       231       241    
           C1QA_HUMAN   112 QPRPAFSAIRRNPPMGGNVVIFDTVITNQEEPYQNHSGRFVCTVPGYYYFTFQVLSQWEICLSIVSSSRGQVRRSLGFCDTTNKGLFQVVSGGMVLQLQQGDQVWVEKDPKKGHIYQGSEADSVFSGFLIFPSA 245
               SCOP domains d2jg9a1 A:90-222 Complement c1q globular head, A chain                                                                               - SCOP domains
               CATH domains 2jg9A00 A:90-223  [code=2.60.120.40, no name defined]                                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee..............eeeeee...ee....eee....eeeeeeeeeee...eeeeeeeee..eee...eeee.......eeeeeeeeeee....eeeeeeeeeee..........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 3 Exon 3.4c  PDB: A:90-223 UniProt: 55-245 [INCOMPLETE]                                                                                  Transcript 3
                 2jg9 A  90 QPRPAFSAIRRNPPMGGNVVIFDTVITNQEEPYQNHSGRFVCTVPGYYYFTFQVLSQWEICLSIVSSSRGQVRRSLGFCDTTNKGLFQVVSGGMVLQLQQGDQVWVEKDPKKGHIYQGSEADSVFSGFLIFPSA 223
                                    99       109       119       129       139       149       159       169       179       189       199       209       219    

Chain B from PDB  Type:PROTEIN  Length:133
 aligned with C1QB_HUMAN | P02746 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:133
                                   128       138       148       158       168       178       188       198       208       218       228       238       248   
           C1QB_HUMAN   119 TQKIAFSATRTINVPLRRDQTIRFDHVITNMNNNYEPRSGKFTCKVPGLYYFTYHASSRGNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDKNSLLGMEGANSIFSGFLLFPDM 251
               SCOP domains d2jg9b1 B:92-223 Complement c1q globular head, B chain                                                                              - SCOP domains
               CATH domains 2jg9B00 B:92-224  [code=2.60.120.40, no name defined]                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee................eeeeee..........ee....eeeeeeeeeee...eeeeeeee....eeeeeeee......eeeeeeeeeee....eeeeeeeeee..........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----T-------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.5c  PDB: B:92-224 UniProt: 63-253 [INCOMPLETE]                                                                                 Transcript 1
                 2jg9 B  92 TQKIAFSATRTINVPLRRDQTIRFDHVITNMNNNYEPRSGKFTCKVPGLYYFTYHASSRGNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDKNSLLGMEGANSIFSGFLLFPDM 224
                                   101       111       121       131       141       151       161       171       181       191       201       211       221   

Chain C from PDB  Type:PROTEIN  Length:129
 aligned with C1QC_HUMAN | P02747 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:129
                                   126       136       146       156       166       176       186       196       206       216       226       236         
           C1QC_HUMAN   117 KFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGFLLFPD 245
               SCOP domains d2jg9c1 C:89-217 Complement c1q globular head, C chain                                                                            SCOP domains
               CATH domains 2jg9C00 C:89-217  [code=2.60.120.40, no name defined]                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee................eeee.....ee....eee....eeeeeeeeeee...eeeeeee..eeeeeeee......eeeeeeeeeee....eeeeeeeeee..........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.3b  PDB: C:89-217 UniProt: 61-245 [INCOMPLETE]                                                                             Transcript 2
                 2jg9 C  89 KFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGFLLFPD 217
                                    98       108       118       128       138       148       158       168       178       188       198       208         

Chain D from PDB  Type:PROTEIN  Length:134
 aligned with C1QA_HUMAN | P02745 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:134
                                   121       131       141       151       161       171       181       191       201       211       221       231       241    
           C1QA_HUMAN   112 QPRPAFSAIRRNPPMGGNVVIFDTVITNQEEPYQNHSGRFVCTVPGYYYFTFQVLSQWEICLSIVSSSRGQVRRSLGFCDTTNKGLFQVVSGGMVLQLQQGDQVWVEKDPKKGHIYQGSEADSVFSGFLIFPSA 245
               SCOP domains d2jg9d1 D:90-222 Complement c1q globular head, A chain                                                                               - SCOP domains
               CATH domains 2jg9D00 D:90-223  [code=2.60.120.40, no name defined]                                                                                  CATH domains
           Pfam domains (1) ----C1q-2jg9D01 D:94-219                                                                                                          ---- Pfam domains (1)
           Pfam domains (2) ----C1q-2jg9D02 D:94-219                                                                                                          ---- Pfam domains (2)
         Sec.struct. author ....eeeee..............eeeeee...ee....eee....eeeeeeeeeee...eeeeeeeee..eee...eeee.......eeeeeeeeeee....eeeeeeeeeee..........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 3 Exon 3.4c  PDB: D:90-223 UniProt: 55-245 [INCOMPLETE]                                                                                  Transcript 3
                 2jg9 D  90 QPRPAFSAIRRNPPMGGNVVIFDTVITNQEEPYQNHSGRFVCTVPGYYYFTFQVLSQWEICLSIVSSSRGQVRRSLGFCDTTNKGLFQVVSGGMVLQLQQGDQVWVEKDPKKGHIYQGSEADSVFSGFLIFPSA 223
                                    99       109       119       129       139       149       159       169       179       189       199       209       219    

Chain E from PDB  Type:PROTEIN  Length:133
 aligned with C1QB_HUMAN | P02746 from UniProtKB/Swiss-Prot  Length:253

    Alignment length:133
                                   128       138       148       158       168       178       188       198       208       218       228       238       248   
           C1QB_HUMAN   119 TQKIAFSATRTINVPLRRDQTIRFDHVITNMNNNYEPRSGKFTCKVPGLYYFTYHASSRGNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDKNSLLGMEGANSIFSGFLLFPDM 251
               SCOP domains d2jg9e1 E:92-223 Complement c1q globular head, B chain                                                                              - SCOP domains
               CATH domains 2jg9E00 E:92-224  [code=2.60.120.40, no name defined]                                                                                 CATH domains
           Pfam domains (1) ----C1q-2jg9E01 E:96-220                                                                                                         ---- Pfam domains (1)
           Pfam domains (2) ----C1q-2jg9E02 E:96-220                                                                                                         ---- Pfam domains (2)
         Sec.struct. author ....eeeee................eeeeee..........ee....eeeeeeeeeee...eeeeeeee....eeeeeeee......eeeeeeeeeee....eeeeeeeeee..........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----T-------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.5c  PDB: E:92-224 UniProt: 63-253 [INCOMPLETE]                                                                                 Transcript 1
                 2jg9 E  92 TQKIAFSATRTINVPLRRDQTIRFDHVITNMNNNYEPRSGKFTCKVPGLYYFTYHASSRGNLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQATDKNSLLGMEGANSIFSGFLLFPDM 224
                                   101       111       121       131       141       151       161       171       181       191       201       211       221   

Chain F from PDB  Type:PROTEIN  Length:129
 aligned with C1QC_HUMAN | P02747 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:129
                                   126       136       146       156       166       176       186       196       206       216       226       236         
           C1QC_HUMAN   117 KFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGFLLFPD 245
               SCOP domains d2jg9f1 F:89-217 Complement c1q globular head, C chain                                                                            SCOP domains
               CATH domains 2jg9F00 F:89-217  [code=2.60.120.40, no name defined]                                                                             CATH domains
           Pfam domains (1) ----C1q-2jg9F01 F:93-214                                                                                                      --- Pfam domains (1)
           Pfam domains (2) ----C1q-2jg9F02 F:93-214                                                                                                      --- Pfam domains (2)
         Sec.struct. author ....eeeee................eeee.....ee....eee....eeeeeeeeeee...eeeeeee..eeeeeeee......eeeeeeeeeee....eeeeeeeeee..........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 2 Exon 2.3b  PDB: F:89-217 UniProt: 61-245 [INCOMPLETE]                                                                             Transcript 2
                 2jg9 F  89 KFQSVFTVTRQTHQPPAPNSLIRFNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAVNDYYDMVGIQGSDSVFSGFLLFPD 217
                                    98       108       118       128       138       148       158       168       178       188       198       208         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 6)

Asymmetric Unit

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: C1q_TNF (45)
(-)
Family: C1q (8)
1aC1q-2jg9D01D:94-219
1bC1q-2jg9D02D:94-219
1cC1q-2jg9E01E:96-220
1dC1q-2jg9E02E:96-220
1eC1q-2jg9F01F:93-214
1fC1q-2jg9F02F:93-214

(-) Gene Ontology  (20, 41)

Asymmetric Unit(hide GO term definitions)
Chain A,D   (C1QA_HUMAN | P02745)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0007267    cell-cell signaling    Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions.
    GO:0006956    complement activation    Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0010039    response to iron ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus.
cellular component
    GO:0005581    collagen trimer    A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
    GO:0005602    complement component C1 complex    A protein complex composed of six subunits of C1q, each formed of the three homologous polypeptide chains C1QA, C1QB, and C1QB, and tetramer of two C1QR and two C1QS polypeptide chains.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain B,E   (C1QB_HUMAN | P02746)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006956    complement activation    Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0048839    inner ear development    The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0005581    collagen trimer    A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
    GO:0005602    complement component C1 complex    A protein complex composed of six subunits of C1q, each formed of the three homologous polypeptide chains C1QA, C1QB, and C1QB, and tetramer of two C1QR and two C1QS polypeptide chains.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain C,F   (C1QC_HUMAN | P02747)
molecular function
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006956    complement activation    Any process involved in the activation of any of the steps of the complement cascade, which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes; the initial steps of complement activation involve one of three pathways, the classical pathway, the alternative pathway, and the lectin pathway, all of which lead to the terminal complement pathway.
    GO:0006958    complement activation, classical pathway    Any process involved in the activation of any of the steps of the classical pathway of the complement cascade which allows for the direct killing of microbes, the disposal of immune complexes, and the regulation of other immune processes.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0030853    negative regulation of granulocyte differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of granulocyte differentiation.
    GO:0045650    negative regulation of macrophage differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of macrophage differentiation.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0005581    collagen trimer    A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        C1QA_HUMAN | P027451pk6 2jg8 2wnu 2wnv 5hkj 5hzf
        C1QB_HUMAN | P027461pk6 2jg8 2wnu 2wnv 5hkj 5hzf
        C1QC_HUMAN | P027471pk6 2jg8 2wnu 2wnv 5hkj 5hzf

(-) Related Entries Specified in the PDB File

1pk6 GLOBULAR HEAD OF THE COMPLEMENT SYSTEM PROTEIN C1Q
2jg8 CRYSTALLOGRAPHIC STRUCTURE OF HUMAN C1Q GLOBULAR HEADS COMPLEXED TO PHOSPHATIDYL- SERINE