2JEN - JenaLib

Title :   FAMILY 12 XYLOGLUCANASE FROM BACILLUS LICHENIFORMIS IN COMPLEX WITH LIGAND

Authors :   T. M. Gloster, F. M. Ibatullin, K. Macauley, J. M. Eklof, S. Roberts, J. P. Turkenburg, M. E. Bjornvad, P. L. Jorgensen, S. Danielsen, K. S. Johansen, T. V. Borchert, K. S. Wilson, H. Brumer, G. J. Davies

Date :   18 Jan 07 (Deposition) - 20 Mar 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym. Unit : A
Biol. Unit 1: A  (6x)

Keywords :   Plant Cell Wall, Glycosidase, Xyloglucanase, Hydrolase, Family 12 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. M. Gloster, F. M. Ibatullin, K. Macauley, J. M. Eklof, S. Roberts, J. P. Turkenburg, M. E. Bjornvad, P. L. Jorgensen, S. Danielsen, K. S. Johansen, T. V. Borchert, K. S. Wilson, H. Brumer, G. J. Davies
Characterization And Three-Dimensional Structures Of Two Distinct Bacterial Xyloglucanases From Families Gh5 And Gh12.
J. Biol. Chem. V. 282 19177 2007
PubMed-ID: 17376777 | Reference-DOI: 10.1074/JBC.M700224200

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 15)

Sites (15, 15)

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TRP A:53 , TYR A:89 , ASP A:137 , TRP A:139 , MET A:157 , ILE A:189 , TRP A:197 , GLU A:243 , GLC A:1268 , GLC A:1274	BINDING SITE FOR RESIDUE GLC A1267
02	AC2	SOFTWARE	ASN A:51 , TRP A:53 , HIS A:97 , GLC A:1267 , BGC A:1269 , XYS A:1271 , XYS A:1272 , HOH A:2187 , HOH A:2356	BINDING SITE FOR RESIDUE GLC A1268
03	AC3	SOFTWARE	TRP A:98 , GLC A:1268 , BGC A:1270 , XYS A:1271 , XYS A:1272 , HOH A:2054	BINDING SITE FOR RESIDUE BGC A1269
04	AC4	SOFTWARE	TRP A:98 , BGC A:1269 , HOH A:2118 , HOH A:2121 , HOH A:2199 , HOH A:2353 , HOH A:2354	BINDING SITE FOR RESIDUE BGC A1270
05	AC5	SOFTWARE	SER A:36 , ASN A:50 , ASN A:51 , VAL A:52 , TRP A:53 , GLC A:1268 , BGC A:1269 , HOH A:2052 , HOH A:2054	BINDING SITE FOR RESIDUE XYS A1271
06	AC6	SOFTWARE	GLC A:1268 , BGC A:1269 , XYS A:1275 , HOH A:2355 , HOH A:2356	BINDING SITE FOR RESIDUE XYS A1272
07	AC7	SOFTWARE	SER A:84 , GLY A:166 , PRO A:167 , ALA A:168 , GLC A:1274 , XYS A:1275 , XYS A:1276 , HOH A:2357 , HOH A:2358	BINDING SITE FOR RESIDUE GLC A1273
08	AC8	SOFTWARE	MET A:157 , TRP A:159 , GLY A:166 , PRO A:167 , ALA A:168 , GLU A:243 , PHE A:245 , GLC A:1267 , GLC A:1273 , XYS A:1275 , HOH A:2359 , HOH A:2361	BINDING SITE FOR RESIDUE GLC A1274
09	AC9	SOFTWARE	TRP A:53 , ILE A:189 , XYS A:1272 , GLC A:1273 , GLC A:1274 , HOH A:2361	BINDING SITE FOR RESIDUE XYS A1275
10	BC1	SOFTWARE	SER A:84 , ASN A:164 , ALA A:165 , GLY A:166 , PHE A:245 , GLC A:1273 , HOH A:2106 , HOH A:2183	BINDING SITE FOR RESIDUE XYS A1276
11	BC2	SOFTWARE	LYS A:38 , GLN A:57 , HOH A:2008 , HOH A:2346 , HOH A:2347 , HOH A:2348 , HOH A:2349	BINDING SITE FOR RESIDUE SO4 A1265
12	BC3	SOFTWARE	LYS A:42 , ASN A:43 , LYS A:44 , HOH A:2032 , HOH A:2351	BINDING SITE FOR RESIDUE SO4 A1266
13	BC4	SOFTWARE	SER A:33 , ASN A:34 , PRO A:35 , TRP A:61 , HOH A:2343	BINDING SITE FOR RESIDUE DIO A1262
14	BC5	SOFTWARE	TRP A:62 , VAL A:76 , THR A:248 , HOH A:2077	BINDING SITE FOR RESIDUE DIO A1263
15	BC6	SOFTWARE	LYS A:38 , LEU A:39 , TYR A:40 , HIS A:67 , HOH A:2007	BINDING SITE FOR RESIDUE GOL A1264

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:233
 aligned with Q7X4S4_BACLI | Q7X4S4 from UniProtKB/TrEMBL  Length:261

    Alignment length:233
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258   
         Q7X4S4_BACLI    29 AASSSNPSDKLYFKNKKYYIFNNVWGADQVSGWWQTIYHNSDSDMGWVWNWPSNTSTVKAYPSIVSGWHWTEGYTAGSGFPTRLSDQKNINTKVSYSISANGTYNAAYDIWLHNTNKASWDSAPTDEIMIWLNNTNAGPAGSYVETVSIGGHSWKVYKGYIDAGGGKGWNVFSFIRTANTQSANLNIRDFTNYLADSKQWLSKTKYVSSVEFGTEVFGGTGQINISNWDVTVR 261
               SCOP domains d2jena_ A: automated matches                                                                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------Glyco_hydro_12-2jenA01 A:104-261                                                                                                                               Pfam domains
         Sec.struct. author .eee.............................eeeeeeee..eeeeeeee.................................hhh.eeeeeeeeeeee..eeeeeeeeeee....................................................................eeeeehhhhhhhhhhh..................eeeeeeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jen A  29 AASSSNPSDKLYFKNKKYYIFNNVWGADQVSGWWQTIYHNSDSDMGWVWNWPSNTSTVKAYPSIVSGWHWTEGYTAGSGFPTRLSDQKNINTKVSYSISANGTYNAAYDIWLHNTNKASWDSAPTDAIMIWLNNTNAGPAGSYVETVSIGGHSWKVYKGYIDAGGGKGWNVFSFIRTANTQSANLNIRDFTNYLADSKQWLSKTKYVSSVEFGTEVFGGTGQINISNWDVTVR 261
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (7, 7)

Asymmetric Unit(hide GO term definitions)

Chain A (Q7X4S4_BACLI | Q7X4S4)

molecular function
	GO:0008810	cellulase activity	Catalysis of the endohydrolysis of (1->4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0000272	polysaccharide catabolic process	The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically.

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