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2JEN
Asym. Unit
Info
Asym.Unit (106 KB)
Biol.Unit 1 (591 KB)
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(1)
Title
:
FAMILY 12 XYLOGLUCANASE FROM BACILLUS LICHENIFORMIS IN COMPLEX WITH LIGAND
Authors
:
T. M. Gloster, F. M. Ibatullin, K. Macauley, J. M. Eklof, S. Roberts, J. P. Turkenburg, M. E. Bjornvad, P. L. Jorgensen, S. Danielsen, K. S. Johansen, T. V. Borchert, K. S. Wilson, H. Brumer, G. J. Davies
Date
:
18 Jan 07 (Deposition) - 20 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Plant Cell Wall, Glycosidase, Xyloglucanase, Hydrolase, Family 12
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. M. Gloster, F. M. Ibatullin, K. Macauley, J. M. Eklof, S. Roberts, J. P. Turkenburg, M. E. Bjornvad, P. L. Jorgensen, S. Danielsen, K. S. Johansen, T. V. Borchert, K. S. Wilson, H. Brumer, G. J. Davies
Characterization And Three-Dimensional Structures Of Two Distinct Bacterial Xyloglucanases From Families Gh5 And Gh12.
J. Biol. Chem. V. 282 19177 2007
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Hetero Components
(6, 15)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
2a: 1,4-DIETHYLENE DIOXIDE (DIOa)
2b: 1,4-DIETHYLENE DIOXIDE (DIOb)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
3c: ALPHA-D-GLUCOSE (GLCc)
3d: ALPHA-D-GLUCOSE (GLCd)
4a: GLYCEROL (GOLa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
6a: XYLOPYRANOSE (XYSa)
6b: XYLOPYRANOSE (XYSb)
6c: XYLOPYRANOSE (XYSc)
6d: XYLOPYRANOSE (XYSd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
2
Ligand/Ion
BETA-D-GLUCOSE
2
DIO
2
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
3
GLC
4
Ligand/Ion
ALPHA-D-GLUCOSE
4
GOL
1
Ligand/Ion
GLYCEROL
5
SO4
2
Ligand/Ion
SULFATE ION
6
XYS
4
Ligand/Ion
XYLOPYRANOSE
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:53 , TYR A:89 , ASP A:137 , TRP A:139 , MET A:157 , ILE A:189 , TRP A:197 , GLU A:243 , GLC A:1268 , GLC A:1274
BINDING SITE FOR RESIDUE GLC A1267
02
AC2
SOFTWARE
ASN A:51 , TRP A:53 , HIS A:97 , GLC A:1267 , BGC A:1269 , XYS A:1271 , XYS A:1272 , HOH A:2187 , HOH A:2356
BINDING SITE FOR RESIDUE GLC A1268
03
AC3
SOFTWARE
TRP A:98 , GLC A:1268 , BGC A:1270 , XYS A:1271 , XYS A:1272 , HOH A:2054
BINDING SITE FOR RESIDUE BGC A1269
04
AC4
SOFTWARE
TRP A:98 , BGC A:1269 , HOH A:2118 , HOH A:2121 , HOH A:2199 , HOH A:2353 , HOH A:2354
BINDING SITE FOR RESIDUE BGC A1270
05
AC5
SOFTWARE
SER A:36 , ASN A:50 , ASN A:51 , VAL A:52 , TRP A:53 , GLC A:1268 , BGC A:1269 , HOH A:2052 , HOH A:2054
BINDING SITE FOR RESIDUE XYS A1271
06
AC6
SOFTWARE
GLC A:1268 , BGC A:1269 , XYS A:1275 , HOH A:2355 , HOH A:2356
BINDING SITE FOR RESIDUE XYS A1272
07
AC7
SOFTWARE
SER A:84 , GLY A:166 , PRO A:167 , ALA A:168 , GLC A:1274 , XYS A:1275 , XYS A:1276 , HOH A:2357 , HOH A:2358
BINDING SITE FOR RESIDUE GLC A1273
08
AC8
SOFTWARE
MET A:157 , TRP A:159 , GLY A:166 , PRO A:167 , ALA A:168 , GLU A:243 , PHE A:245 , GLC A:1267 , GLC A:1273 , XYS A:1275 , HOH A:2359 , HOH A:2361
BINDING SITE FOR RESIDUE GLC A1274
09
AC9
SOFTWARE
TRP A:53 , ILE A:189 , XYS A:1272 , GLC A:1273 , GLC A:1274 , HOH A:2361
BINDING SITE FOR RESIDUE XYS A1275
10
BC1
SOFTWARE
SER A:84 , ASN A:164 , ALA A:165 , GLY A:166 , PHE A:245 , GLC A:1273 , HOH A:2106 , HOH A:2183
BINDING SITE FOR RESIDUE XYS A1276
11
BC2
SOFTWARE
LYS A:38 , GLN A:57 , HOH A:2008 , HOH A:2346 , HOH A:2347 , HOH A:2348 , HOH A:2349
BINDING SITE FOR RESIDUE SO4 A1265
12
BC3
SOFTWARE
LYS A:42 , ASN A:43 , LYS A:44 , HOH A:2032 , HOH A:2351
BINDING SITE FOR RESIDUE SO4 A1266
13
BC4
SOFTWARE
SER A:33 , ASN A:34 , PRO A:35 , TRP A:61 , HOH A:2343
BINDING SITE FOR RESIDUE DIO A1262
14
BC5
SOFTWARE
TRP A:62 , VAL A:76 , THR A:248 , HOH A:2077
BINDING SITE FOR RESIDUE DIO A1263
15
BC6
SOFTWARE
LYS A:38 , LEU A:39 , TYR A:40 , HIS A:67 , HOH A:2007
BINDING SITE FOR RESIDUE GOL A1264
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2jena_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
automated matches
(133)
Protein domain
:
automated matches
(133)
Bacillus licheniformis [TaxId: 1402]
(1)
1a
d2jena_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_12_2jenA01 (A:104-261)
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Clans
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Organisms
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(
)
Clan
:
Concanavalin
(293)
Family
:
Glyco_hydro_12
(8)
Bacillus licheniformis
(2)
1a
Glyco_hydro_12-2jenA01
A:104-261
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Chain A
Asymmetric Unit 1
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Asym.Unit (106 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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