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(-) Description

Title :  GLYPHOSATE N-ACETYLTRANSFERASE BOUND TO ACETYL COA AND 3-PHOSPHOGLYCERATE
 
Authors :  D. L. Siehl, L. A. Castle, R. Gorton, R. J. Keenan
Date :  06 Jan 07  (Deposition) - 13 Feb 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Gnat, Glyphosate, Transferase, N-Acetyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. L. Siehl, L. A. Castle, R. Gorton, R. J. Keenan
The Molecular Basis Of Glyphosate Resistance By An Optimized Microbial Acetyltransferase.
J. Biol. Chem. V. 282 11446 2007
PubMed-ID: 17272278  |  Reference-DOI: 10.1074/JBC.M610267200

(-) Compounds

Molecule 1 - GLYPHOSATE N-ACETYLTRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE80
    Expression System Strain: TG1
    Expression System Taxid: 562
    Organism Scientific: BACILLUS LICHENIFORMIS
    Organism Taxid: 1402
    Other Details: THE ENZYME IS A SHUFFLED VARIANT DERIVED FROM GENES DISCOVERED IN B. LICHENIFORMIS

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
13PG1Ligand/Ion3-PHOSPHOGLYCERIC ACID
2ACO1Ligand/IonACETYL COENZYME *A
3SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:75 , ALA A:76 , THR A:77 , ARG A:82 , GLU A:83 , GLN A:84 , LYS A:85 , GLY A:87 , SER A:88 , CYS A:108 , ASN A:109 , ARG A:111 , SER A:113 , ALA A:114 , GLY A:116 , TYR A:117 , TYR A:118 , LYS A:120 , 3PG A:1148 , SO4 A:1149 , HOH A:2074 , HOH A:2079 , HOH A:2093 , HOH A:2098 , HOH A:2120 , HOH A:2121 , HOH A:2122 , HOH A:2123 , HOH A:2124 , HOH A:2125 , HOH A:2126BINDING SITE FOR RESIDUE ACO A1147
2AC2SOFTWARELEU A:20 , ARG A:21 , PHE A:31 , ARG A:73 , GLY A:74 , ARG A:111 , VAL A:135 , HIS A:138 , ACO A:1147 , SO4 A:1149 , HOH A:2129BINDING SITE FOR RESIDUE 3PG A1148
3AC3SOFTWAREARG A:21 , ARG A:111 , HIS A:138 , ACO A:1147 , 3PG A:1148 , HOH A:2129BINDING SITE FOR RESIDUE SO4 A1149

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JDD)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:133 -Pro A:134

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JDD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JDD)

(-) Exons   (0, 0)

(no "Exon" information available for 2JDD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:145
 aligned with Q65LG7_BACLD | Q65LG7 from UniProtKB/TrEMBL  Length:146

    Alignment length:145
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141     
         Q65LG7_BACLD     2 IEVKPINAEDTYEIRHRILRPNQPLEACMYETDLLGGAFHLGGYYRGKLISIASFHKAEHSELEGEEQYQLRGMATLEGYREQKAGSTLIRHAEELLRKKGADLLWCNARTSVSGYYEKLGFSEQGEVYDIPPIGPHILMYKKLT 146
               SCOP domains d2jdda_ A: Probable acetyltransferase YitI                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------Acetyltransf_1-2jddA01 A:44-124                                                  ---------------------- Pfam domains
         Sec.struct. author .eeeeehhhhhhhhhhhhh....hhhhhhhhhhhh...eeeeeee..eeeeeeeeee..........eeeeeeeee.......hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhh..eeeeeeee.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jdd A   2 IEVKPINAEDTYELRHRILRPNQPIEACMFESDLLRGAFHLGGYYGGKLISIASFHQAEHSELQGQKQYQLRGMATLEGYREQKAGSSLIKHAEEILRKRGADLLWCNARTSASGYYKKLGFSEQGEVFDTPPVGPHILMYKRIT 146
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2JDD)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Acetyltrans (109)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q65LG7_BACLD | Q65LG7)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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 Related Entries

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UniProtKB/TrEMBL
        Q65LG7_BACLD | Q65LG7: 2bsw 2jdc

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