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(-) Description

Title :  PAE2307 WITH AMP
 
Authors :  K. Rajasekaran, J. S. Lott, J. M. Johnston
Date :  04 Dec 06  (Deposition) - 05 Aug 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (2x)
Keywords :  Hypothetical Protein, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Rajasekaran, J. S. Lott, J. M. Johnston, E. N. Baker
Pae2307 A Phosphotransferase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PAE2307
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET28
    Organism Scientific: PYROBACULUM AEROPHILUM
    Organism Taxid: 13773

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 7)

Asymmetric Unit (3, 7)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2AMP3Ligand/IonADENOSINE MONOPHOSPHATE
3EPE3Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
Biological Unit 1 (3, 14)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2AMP6Ligand/IonADENOSINE MONOPHOSPHATE
3EPE6Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS B:27 , PHE B:28 , ALA B:55 , SER B:56 , HIS B:85 , HOH B:2020 , ASN C:20 , TRP C:95 , THR C:116 , ALA C:117 , ASN C:118 , VAL C:163 , TYR C:165 , HOH C:2103 , HOH C:2104 , HOH C:2105BINDING SITE FOR RESIDUE AMP C1168
2AC2SOFTWAREASN A:20 , TRP A:95 , ALA A:117 , ASN A:118 , VAL A:163 , TYR A:165 , HOH A:2095 , HOH A:2096 , HIS C:27 , PHE C:28 , ALA C:55 , SER C:56 , HIS C:85 , HOH C:2019 , HOH C:2021BINDING SITE FOR RESIDUE AMP A1168
3AC3SOFTWAREPHE A:28 , GLU A:54 , ALA A:55 , SER A:56 , HIS A:85 , HOH A:2016 , ASN B:20 , TRP B:95 , ALA B:117 , ASN B:118 , VAL B:163 , TYR B:165 , HOH B:2101 , HOH B:2102 , HOH B:2103 , HOH B:2104 , HOH B:2105 , HOH B:2107 , HOH B:2108BINDING SITE FOR RESIDUE AMP B1168
4AC4SOFTWAREGLN A:17 , GLY A:18 , ASN A:93 , ALA A:94 , TRP A:95 , PRO B:44BINDING SITE FOR RESIDUE EPE A1169
5AC5SOFTWAREGLY C:18 , PRO C:44 , ASN C:93 , ALA C:94 , TRP C:95 , HOH C:2012 , HOH C:2066BINDING SITE FOR RESIDUE EPE C1169
6AC6SOFTWAREARG A:111 , ARG B:111 , HOH B:2109 , ARG C:111 , ILE C:112BINDING SITE FOR RESIDUE ACT B1169
7AC7SOFTWAREPRO A:44 , GLY B:18 , ASN B:93 , ALA B:94 , TRP B:95 , HOH B:2013 , HOH B:2016BINDING SITE FOR RESIDUE EPE B1170

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JB7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2JB7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JB7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2JB7)

(-) Exons   (0, 0)

(no "Exon" information available for 2JB7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:163
 aligned with Q8ZVF7_PYRAE | Q8ZVF7 from UniProtKB/TrEMBL  Length:164

    Alignment length:163
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   
         Q8ZVF7_PYRAE     2 SIKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 164
               SCOP domains d2jb7a_ A: automated matches                                                                                                                                        SCOP domains
               CATH domains 2jb7A00 A:5-167 hypothetical protein tt1634                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......eeeeee....hhhhhhhhhhhh.....eeeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh.....eeeeee...eeeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jb7 A   5 SIKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 167
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164   


Chain B from PDB  Type:PROTEIN  Length:163
 aligned with Q8ZVF7_PYRAE | Q8ZVF7 from UniProtKB/TrEMBL  Length:164

    Alignment length:163
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   
         Q8ZVF7_PYRAE     2 SIKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 164
               SCOP domains d2jb7b_ B: automated matches                                                                                                                                        SCOP domains
               CATH domains 2jb7B00 B:5-167 hypothetical protein tt1634                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......eeeeee....hhhhhhhhhhhh.....eeeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh.....eeeeee...eeeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2jb7 B   5 SIKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 167
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164   


Chain C from PDB  Type:PROTEIN  Length:162
 aligned with Q8ZVF7_PYRAE | Q8ZVF7 from UniProtKB/TrEMBL  Length:164

    Alignment length:162
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162  
         Q8ZVF7_PYRAE     3 IKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 164
               SCOP domains d2jb7c_ C: automated matches                                                                                                                                       SCOP domains
               CATH domains 2jb7C00 C:6-167 hypothetical protein tt1634                                                                                                                        CATH domains
           Pfam domains (1) -----Adenosine_kin-2jb7C01 C:11-167                                                                                                                                Pfam domains (1)
           Pfam domains (2) -----Adenosine_kin-2jb7C02 C:11-167                                                                                                                                Pfam domains (2)
           Pfam domains (3) -----Adenosine_kin-2jb7C03 C:11-167                                                                                                                                Pfam domains (3)
         Sec.struct. author .eeeeeee......eeeeee....hhhhhhhhhhhh.....eeeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh.....eeeeee...eeeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2jb7 C   6 IKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 167
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: no clan defined [family: Adenosine_kin] (3)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q8ZVF7_PYRAE | Q8ZVF7)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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  2jb7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8ZVF7_PYRAE | Q8ZVF7: 1wvq 2gl0

(-) Related Entries Specified in the PDB File

1wvq STRUCTURE OF CONSERVED HYPOTHETICAL PROTEIN PAE2307 FROMPYROBACULUM AEROPHILUM
2gl0 STRUCTURE OF PAE2307 IN COMPLEX WITH ADENOSINE