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(-) Description

Title :  STRUCTURE OF PAE2307 IN COMPLEX WITH ADENOSINE
 
Authors :  J. S. Lott, B. Paget, J. M. Johnston, E. N. Baker
Date :  04 Apr 06  (Deposition) - 06 Jun 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Histidine Phosphorylation, Putative Kinase, Protein-Adenosine Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. S. Lott, B. Paget, J. M. Johnston, L. T. Delbaere, J. A. Sigrell-Simon, M. J. Banfield, E. N. Baker
The Structure Of An Ancient Conserved Domain Establishes A Structural Basis For Stable Histidine Phosphorylation And Identifies A New Family Of Adenosine-Specific Kinases.
J. Biol. Chem. V. 281 22131 2006
PubMed-ID: 16737961  |  Reference-DOI: 10.1074/JBC.M603062200

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    ChainsA, B, C, D, E, F
    EC Number2.7.1.20
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET28
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GenePAE2307
    Organism ScientificPYROBACULUM AEROPHILUM
    Organism Taxid178306
    StrainIM2

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1ADN6Ligand/IonADENOSINE
2PO42Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG D:111 , ARG E:111 , ARG F:111BINDING SITE FOR RESIDUE PO4 D 501
2AC2SOFTWAREARG A:111 , ILE A:112 , PHE A:113 , ARG B:111 , ARG C:111 , HOH C:958BINDING SITE FOR RESIDUE PO4 C 502
3AC3SOFTWAREHIS A:27 , PHE A:28 , HIS A:85 , HOH A:921 , HOH A:927 , HOH A:965 , HOH A:971 , ASN B:20 , TRP B:95 , ALA B:117 , ASN B:118 , VAL B:163 , TYR B:165BINDING SITE FOR RESIDUE ADN A 901
4AC4SOFTWAREPHE B:28 , HIS B:85 , HOH B:911 , HOH B:938 , ASN C:20 , TRP C:95 , ILE C:97 , THR C:116 , ALA C:117 , ASN C:118 , VAL C:163 , TYR C:165BINDING SITE FOR RESIDUE ADN B 902
5AC5SOFTWAREASN A:20 , TRP A:95 , THR A:116 , ALA A:117 , ASN A:118 , VAL A:163 , TYR A:165 , HIS C:27 , PHE C:28 , HIS C:85 , HOH C:910 , HOH C:931 , HOH C:934BINDING SITE FOR RESIDUE ADN C 903
6AC6SOFTWAREPHE D:28 , HIS D:85 , HOH D:930 , HOH D:938 , ASN E:20 , TRP E:95 , ILE E:97 , THR E:116 , ALA E:117 , VAL E:163 , TYR E:165BINDING SITE FOR RESIDUE ADN D 904
7AC7SOFTWAREHIS E:27 , PHE E:28 , HOH E:913 , ASN F:20 , TRP F:95 , THR F:116 , ALA F:117 , ASN F:118 , VAL F:163 , TYR F:165BINDING SITE FOR RESIDUE ADN E 905
8AC8SOFTWAREASN D:20 , TRP D:95 , THR D:116 , ALA D:117 , ASN D:118 , TYR D:165 , PHE F:28 , HOH F:909 , HOH F:943BINDING SITE FOR RESIDUE ADN F 906

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GL0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GL0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GL0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2GL0)

(-) Exons   (0, 0)

(no "Exon" information available for 2GL0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:163
 aligned with Q8ZVF7_PYRAE | Q8ZVF7 from UniProtKB/TrEMBL  Length:164

    Alignment length:163
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   
         Q8ZVF7_PYRAE     2 SIKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 164
               SCOP domains d2gl0a_ A: automated matches                                                                                                                                        SCOP domains
               CATH domains 2gl0A00 A:5-167 hypothetical protein tt1634                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....eeeeeee....hhhhhhhhhhhh.....eeeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh.....eeeeee...eeeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gl0 A   5 SIKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 167
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164   

Chain B from PDB  Type:PROTEIN  Length:163
 aligned with Q8ZVF7_PYRAE | Q8ZVF7 from UniProtKB/TrEMBL  Length:164

    Alignment length:163
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   
         Q8ZVF7_PYRAE     2 SIKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 164
               SCOP domains d2gl0b_ B: automated matches                                                                                                                                        SCOP domains
               CATH domains 2gl0B00 B:5-167 hypothetical protein tt1634                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee......eeeeee....hhhhhhhhhhhh.....eeeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhh....eeeeee...eeeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gl0 B   5 SIKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 167
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164   

Chain C from PDB  Type:PROTEIN  Length:162
 aligned with Q8ZVF7_PYRAE | Q8ZVF7 from UniProtKB/TrEMBL  Length:164

    Alignment length:162
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162  
         Q8ZVF7_PYRAE     3 IKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 164
               SCOP domains d2gl0c_ C: automated matches                                                                                                                                       SCOP domains
               CATH domains 2gl0C00 C:6-167 hypothetical protein tt1634                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.......eeeeee....hhhhhhhhhhhh.....eeeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh.....eeeeee...eeeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2gl0 C   6 IKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 167
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165  

Chain D from PDB  Type:PROTEIN  Length:163
 aligned with Q8ZVF7_PYRAE | Q8ZVF7 from UniProtKB/TrEMBL  Length:164

    Alignment length:163
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   
         Q8ZVF7_PYRAE     2 SIKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 164
               SCOP domains d2gl0d_ D: automated matches                                                                                                                                        SCOP domains
               CATH domains 2gl0D00 D:5-167 hypothetical protein tt1634                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......eeeeee....hhhhhhhhhhhh.....eeeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh.....eeeeee...eeeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gl0 D   5 SIKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 167
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164   

Chain E from PDB  Type:PROTEIN  Length:163
 aligned with Q8ZVF7_PYRAE | Q8ZVF7 from UniProtKB/TrEMBL  Length:164

    Alignment length:163
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   
         Q8ZVF7_PYRAE     2 SIKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 164
               SCOP domains d2gl0e_ E: automated matches                                                                                                                                        SCOP domains
               CATH domains 2gl0E00 E:5-167 hypothetical protein tt1634                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.......eeeeee....hhhhhhhhhhhhhh...eeeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh.....eeeeee...eeeeeee.....eeeeeeee.....ee.hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gl0 E   5 SIKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 167
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164   

Chain F from PDB  Type:PROTEIN  Length:162
 aligned with Q8ZVF7_PYRAE | Q8ZVF7 from UniProtKB/TrEMBL  Length:164

    Alignment length:162
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162  
         Q8ZVF7_PYRAE     3 IKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 164
               SCOP domains d2gl0f_ F: automated matches                                                                                                                                       SCOP domains
               CATH domains 2gl0F00 F:6-167 hypothetical protein tt1634                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.......eeeeee....hhhhhhhhhhhh.....eeeeeee......eeeeee.hhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh.....eeeeee...eeeeeeeee..eeeeeeeee.....ee.hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2gl0 F   6 IKFELIDVPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASGKRLVRHEANDEELRNLAIDLCKKIAAGHVFVIYIRNAWPINVLNAIKNVPEVVRIFAATANPLKVIVAEVEPERRGVVGVVDGHSPLGVETEKDREERKKFLREVVKYKL 167
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GL0)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q8ZVF7_PYRAE | Q8ZVF7)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8ZVF7_PYRAE | Q8ZVF71wvq 2jb7

(-) Related Entries Specified in the PDB File

1wvq APO STRUCTURE