2IZ0 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   PEX INHIBITOR-HOME DATA

Authors :   R. Sundaramoorthy, J. Iulek, W. N. Hunter

Date :   23 Jul 06 (Deposition) - 23 Jan 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.60

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C  (2x)

Keywords :   Pentose Shunt, Oxidoreductase, Gluconate Utilization, Pentose Phosphate Pathway (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Sundaramoorthy, J. Iulek, M. P. Barrett, O. Bidet, G. F. Ruda, I. H. Gilbert, W. N. Hunter
Crystal Structures Of A Bacterial 6- Phosphogluconate Dehydrogenase Reveal Aspects Of Specificity, Mechanism And Mode Of Inhibition By Analogues Of High-Energy Reaction Intermediates.
Febs J. V. 274 275 2007
PubMed-ID: 17222187 | Reference-DOI: 10.1111/J.1742-4658.2006.05585.X

Molecule 1 - 6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING
	Chains	:	A, B, C
	EC Number	:	1.1.1.44
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Scientific	:	LACTOCOCCUS LACTIS
	Organism Taxid	:	1358
	Strain	:	MG1363

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (8, 14)

No.	Name	Count	Type	Full Name
1	ATR	2	Ligand/Ion	2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE
2	CL	4	Ligand/Ion	CHLORIDE ION
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	GOL	2	Ligand/Ion	GLYCEROL
5	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
6	P33	2	Ligand/Ion	3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
7	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
8	RES	1	Ligand/Ion	4-PHOSPHO-D-ERYTHRONOHYDROXAMIC ACID

Biological Unit 1 (7, 7)

No.	Name	Count	Type	Full Name
1	ATR	1	Ligand/Ion	2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	GOL	1	Ligand/Ion	GLYCEROL
5	NAP	1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
6	P33	1	Ligand/Ion	3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
7	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
8	RES	1	Ligand/Ion	4-PHOSPHO-D-ERYTHRONOHYDROXAMIC ACID

Biological Unit 2 (3, 6)

No.	Name	Count	Type	Full Name
1	ATR	2	Ligand/Ion	2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
4	GOL	2	Ligand/Ion	GLYCEROL
5	NAP	-1	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
6	P33	2	Ligand/Ion	3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
7	PEG	-1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
8	RES	-1	Ligand/Ion	4-PHOSPHO-D-ERYTHRONOHYDROXAMIC ACID

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER B:128 , GLY B:129 , ILE B:367	BINDING SITE FOR RESIDUE CL B1471
02	AC2	SOFTWARE	ASN B:112 , GLY B:144 , GLN B:145 , ASN B:177 , HOH B:2084 , HOH B:2274	BINDING SITE FOR RESIDUE CL B1472
03	AC3	SOFTWARE	SER C:128 , GLY C:129 , HIS C:187 , ILE C:367	BINDING SITE FOR RESIDUE CL C1471
04	AC4	SOFTWARE	ASN C:112 , GLY C:144 , GLN C:145 , ASN C:177 , HOH C:2081	BINDING SITE FOR RESIDUE CL C1472
05	AC5	SOFTWARE	GLY A:10 , MET A:11 , ALA A:12 , VAL A:13 , MET A:14 , ASN A:33 , ARG A:34 , THR A:35 , MET A:73 , VAL A:74 , GLN A:75 , ALA A:76 , ALA A:79 , GLY A:101 , ASN A:102 , VAL A:127 , LYS A:184 , RES A:1471 , HOH A:2484 , HOH A:2486 , HOH A:2488 , HOH A:2489 , HOH A:2490 , HOH A:2491 , HOH A:2492 , GLY B:451	BINDING SITE FOR RESIDUE NAP A1470
06	AC6	SOFTWARE	ASN A:102 , LYS A:184 , ASN A:188 , GLU A:191 , TYR A:192 , ASN A:261 , LYS A:262 , ARG A:289 , NAP A:1470 , HOH A:2219 , HOH A:2292 , HOH A:2492 , HOH A:2493 , ARG B:447 , PHE B:450 , HIS B:453	BINDING SITE FOR RESIDUE RES A1471
07	AC7	SOFTWARE	GLN A:165 , GLU A:371 , PEG A:1474 , HOH A:2497 , HOH A:2498 , GLN C:47 , P33 C:1474 , HOH C:2584	BINDING SITE FOR RESIDUE P33 A1473
08	AC8	SOFTWARE	ALA B:12 , ASN B:33 , ARG B:34 , THR B:35 , LYS B:38 , VAL B:74 , GLN B:75 , ALA B:79 , THR B:83 , HOH B:2046 , HOH B:2556 , HOH B:2557 , HOH B:2558 , HOH B:2559 , HOH B:2560 , HOH B:2562 , HOH B:2563 , HOH B:2564 , HOH B:2565	BINDING SITE FOR RESIDUE ATR B1470
09	AC9	SOFTWARE	GLN B:444 , ARG B:447 , HIS B:453 , THR B:454 , HOH B:2534 , HOH B:2567 , HOH B:2568	BINDING SITE FOR RESIDUE EDO B1473
10	BC1	SOFTWARE	GLY C:10 , MET C:11 , ASN C:33 , ARG C:34 , THR C:35 , LYS C:38 , VAL C:74 , GLN C:75 , ALA C:79 , THR C:83 , HOH C:2016 , HOH C:2062 , HOH C:2571 , HOH C:2572 , HOH C:2574	BINDING SITE FOR RESIDUE ATR C1470
11	BC2	SOFTWARE	PRO A:164 , ASP A:166 , P33 A:1473 , PHE C:43 , GLN C:47 , LYS C:49 , LEU C:51 , HOH C:2085 , HOH C:2579 , HOH C:2582 , HOH C:2583 , HOH C:2584	BINDING SITE FOR RESIDUE P33 C1474
12	BC3	SOFTWARE	GLU A:23 , SER A:24 , LYS A:49 , ASN A:50 , HOH A:2494 , HOH A:2495 , HOH A:2496 , ARG C:25	BINDING SITE FOR RESIDUE GOL A1472
13	BC4	SOFTWARE	P33 A:1473 , HOH A:2500 , HOH C:2584	BINDING SITE FOR RESIDUE PEG A1474
14	BC5	SOFTWARE	PRO C:278 , PRO C:280 , ALA C:288 , ILE C:291 , SER C:428 , TYR C:429 , SER C:432 , HOH C:2378 , HOH C:2379 , HOH C:2578	BINDING SITE FOR RESIDUE GOL C1473

(no "SS Bond" information available for 2IZ0)

Asymmetric Unit

No.	Residues
1	Lys A:66	-	Pro A:67
2	Lys B:66	-	Pro B:67
3	Lys C:66	-	Pro C:67

(no "SAP(SNP)/Variant" information available for 2IZ0)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	6PGD	PS00461	6-phosphogluconate dehydrogenase signature.	6PGD_LACLM	255-267	3	A:255-267 B:255-267 C:255-267

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	6PGD	PS00461	6-phosphogluconate dehydrogenase signature.	6PGD_LACLM	255-267	2	A:255-267 B:255-267 -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	6PGD	PS00461	6-phosphogluconate dehydrogenase signature.	6PGD_LACLM	255-267	2	- - C:255-267

(no "Exon" information available for 2IZ0)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:470
 aligned with 6PGD_LACLM | P96789 from UniProtKB/Swiss-Prot  Length:472

    Alignment length:470
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470
           6PGD_LACLM     1 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVYKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 470
               SCOP domains d2iz0a1 A:1-177 automated matches                                                                                                                                                d2iz0a2 A:178-470 automated matches                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2iz0A01 A:1-181 NAD(P)-binding Rossmann-like Domain                                                                                                                                  2iz0A02 A:182-436 N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2                                                                                                                                                                                    2iz0A03 A:437-470                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee..hhhhhhhhhhhhhh...eeee..hhhhhhhhhhhh....eee..hhhhhhhh.....eeee....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhh....eeeeeee.hhhhhhhhh..eeeeehhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhh.........hhhhhh.......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..ee......ee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------6PGD         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iz0 A   1 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 470
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470

Chain B from PDB  Type:PROTEIN  Length:470
 aligned with 6PGD_LACLM | P96789 from UniProtKB/Swiss-Prot  Length:472

    Alignment length:472
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468  
           6PGD_LACLM     - --MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVYKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 470
               SCOP domains d2iz0b1 B:-1-177 automated matches                                                                                                                                                 d2iz0b2 B:178-470 automated matches                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2iz0B01 B:-1-181 NAD(P)-binding Rossmann-like Domain                                                                                                                                   2iz0B02 B:182-436 N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2                                                                                                                                                                                    2iz0B03 B:437-470                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee..hhhhhhhhhhhhhh...eeee..hhhhhhhhhhhh....eee..hhhhhhhh.....eeee....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhh..eeeeeeeehhhhhhhhh.eeeee.hhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhhhh........hhhh......--...hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------6PGD         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iz0 B  -1 HHMAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAG--GTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 470
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258 |  |  268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468  
                                                                                                                                                                                                                                                                                               260  |                                                                                                                                                                                                               
                                                                                                                                                                                                                                                                                                  263

Chain C from PDB  Type:PROTEIN  Length:469
 aligned with 6PGD_LACLM | P96789 from UniProtKB/Swiss-Prot  Length:472

    Alignment length:469
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461         
           6PGD_LACLM     2 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVYKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 470
               SCOP domains d2iz0c1 C:2-177 automated matches                                                                                                                                               d2iz0c2 C:178-470 automated matches                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2iz0C01 C:2-181 NAD(P)-binding Rossmann-like Domain                                                                                                                                 2iz0C02 C:182-436 N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2                                                                                                                                                                                    2iz0C03 C:437-470                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..hhhhhhhhhhhhhh...eeee..hhhhhhhhhhhh....eee..hhhhhhhhh....eeee....hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhh..eeee.hhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.....hhhhhhhhhhh.........hhhhhh..........hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh..........hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------6PGD         ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iz0 C   2 AQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPALDFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 470
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 2IZ0)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (6PGD_LACLM | P96789)

molecular function
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity	Catalysis of the reaction: 6-phospho-D-gluconate + NADP+ = D-ribulose 5-phosphate + CO2 + NADPH + H+.
biological process
	GO:0019521	D-gluconate metabolic process	The chemical reactions and pathways involving D-gluconate, the anion of D-gluconic acid, the aldonic acid derived from glucose.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006098	pentose-phosphate shunt	The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.

Asymmetric Unit
	Complete Structure
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	Cis Peptide Bonds
		Lys A:66 - Pro A:67	[ RasMol ]
		Lys B:66 - Pro B:67	[ RasMol ]
		Lys C:66 - Pro C:67	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	2iz0
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		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	6PGD_LACLM \| P96789
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.1.1.44
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	6PGD_LACLM \| P96789
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	6PGD_LACLM \| P96789	:	2iyo 2iyp 2iz1

2iyo	STRUCTURAL CHARACTERIZATION OF A BACTERIAL 6PDH REVEALS ASPECTS OF SPECIFICITY, MECHANISM AND MODE OF INHIBITION
2iyp	PRODUCT RUP
2iz1	6PDH COMPLEXED WITH PEX INHIBITOR DATA

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 14)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 3)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 6)

CATH Domains (3, 9)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File