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Asym. Unit
Info
Asym.Unit (275 KB)
Biol.Unit 1 (179 KB)
Biol.Unit 2 (181 KB)
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(1)
Title
:
PEX INHIBITOR-HOME DATA
Authors
:
R. Sundaramoorthy, J. Iulek, W. N. Hunter
Date
:
23 Jul 06 (Deposition) - 23 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Keywords
:
Pentose Shunt, Oxidoreductase, Gluconate Utilization, Pentose Phosphate Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Sundaramoorthy, J. Iulek, M. P. Barrett, O. Bidet, G. F. Ruda, I. H. Gilbert, W. N. Hunter
Crystal Structures Of A Bacterial 6- Phosphogluconate Dehydrogenase Reveal Aspects Of Specificity, Mechanism And Mode Of Inhibition By Analogues Of High-Energy Reaction Intermediates.
Febs J. V. 274 275 2007
[
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Hetero Components
(8, 14)
Info
All Hetero Components
1a: 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSP... (ATRa)
1b: 2'-MONOPHOSPHOADENOSINE-5'-DIPHOSP... (ATRb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: 1,2-ETHANEDIOL (EDOa)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
6a: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33a)
6b: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20... (P33b)
7a: DI(HYDROXYETHYL)ETHER (PEGa)
8a: 4-PHOSPHO-D-ERYTHRONOHYDROXAMIC AC... (RESa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATR
2
Ligand/Ion
2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHATE
2
CL
4
Ligand/Ion
CHLORIDE ION
3
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
4
GOL
2
Ligand/Ion
GLYCEROL
5
NAP
1
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
6
P33
2
Ligand/Ion
3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL
7
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
8
RES
1
Ligand/Ion
4-PHOSPHO-D-ERYTHRONOHYDROXAMIC ACID
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER B:128 , GLY B:129 , ILE B:367
BINDING SITE FOR RESIDUE CL B1471
02
AC2
SOFTWARE
ASN B:112 , GLY B:144 , GLN B:145 , ASN B:177 , HOH B:2084 , HOH B:2274
BINDING SITE FOR RESIDUE CL B1472
03
AC3
SOFTWARE
SER C:128 , GLY C:129 , HIS C:187 , ILE C:367
BINDING SITE FOR RESIDUE CL C1471
04
AC4
SOFTWARE
ASN C:112 , GLY C:144 , GLN C:145 , ASN C:177 , HOH C:2081
BINDING SITE FOR RESIDUE CL C1472
05
AC5
SOFTWARE
GLY A:10 , MET A:11 , ALA A:12 , VAL A:13 , MET A:14 , ASN A:33 , ARG A:34 , THR A:35 , MET A:73 , VAL A:74 , GLN A:75 , ALA A:76 , ALA A:79 , GLY A:101 , ASN A:102 , VAL A:127 , LYS A:184 , RES A:1471 , HOH A:2484 , HOH A:2486 , HOH A:2488 , HOH A:2489 , HOH A:2490 , HOH A:2491 , HOH A:2492 , GLY B:451
BINDING SITE FOR RESIDUE NAP A1470
06
AC6
SOFTWARE
ASN A:102 , LYS A:184 , ASN A:188 , GLU A:191 , TYR A:192 , ASN A:261 , LYS A:262 , ARG A:289 , NAP A:1470 , HOH A:2219 , HOH A:2292 , HOH A:2492 , HOH A:2493 , ARG B:447 , PHE B:450 , HIS B:453
BINDING SITE FOR RESIDUE RES A1471
07
AC7
SOFTWARE
GLN A:165 , GLU A:371 , PEG A:1474 , HOH A:2497 , HOH A:2498 , GLN C:47 , P33 C:1474 , HOH C:2584
BINDING SITE FOR RESIDUE P33 A1473
08
AC8
SOFTWARE
ALA B:12 , ASN B:33 , ARG B:34 , THR B:35 , LYS B:38 , VAL B:74 , GLN B:75 , ALA B:79 , THR B:83 , HOH B:2046 , HOH B:2556 , HOH B:2557 , HOH B:2558 , HOH B:2559 , HOH B:2560 , HOH B:2562 , HOH B:2563 , HOH B:2564 , HOH B:2565
BINDING SITE FOR RESIDUE ATR B1470
09
AC9
SOFTWARE
GLN B:444 , ARG B:447 , HIS B:453 , THR B:454 , HOH B:2534 , HOH B:2567 , HOH B:2568
BINDING SITE FOR RESIDUE EDO B1473
10
BC1
SOFTWARE
GLY C:10 , MET C:11 , ASN C:33 , ARG C:34 , THR C:35 , LYS C:38 , VAL C:74 , GLN C:75 , ALA C:79 , THR C:83 , HOH C:2016 , HOH C:2062 , HOH C:2571 , HOH C:2572 , HOH C:2574
BINDING SITE FOR RESIDUE ATR C1470
11
BC2
SOFTWARE
PRO A:164 , ASP A:166 , P33 A:1473 , PHE C:43 , GLN C:47 , LYS C:49 , LEU C:51 , HOH C:2085 , HOH C:2579 , HOH C:2582 , HOH C:2583 , HOH C:2584
BINDING SITE FOR RESIDUE P33 C1474
12
BC3
SOFTWARE
GLU A:23 , SER A:24 , LYS A:49 , ASN A:50 , HOH A:2494 , HOH A:2495 , HOH A:2496 , ARG C:25
BINDING SITE FOR RESIDUE GOL A1472
13
BC4
SOFTWARE
P33 A:1473 , HOH A:2500 , HOH C:2584
BINDING SITE FOR RESIDUE PEG A1474
14
BC5
SOFTWARE
PRO C:278 , PRO C:280 , ALA C:288 , ILE C:291 , SER C:428 , TYR C:429 , SER C:432 , HOH C:2378 , HOH C:2379 , HOH C:2578
BINDING SITE FOR RESIDUE GOL C1473
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: 6PGD (A:255-267,B:255-267,C:255-267)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
6PGD
PS00461
6-phosphogluconate dehydrogenase signature.
6PGD_LACLM
255-267
3
A:255-267
B:255-267
C:255-267
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2iz0a2 (A:178-470)
1b: SCOP_d2iz0b2 (B:178-470)
1c: SCOP_d2iz0c2 (C:178-470)
2a: SCOP_d2iz0a1 (A:1-177)
2b: SCOP_d2iz0b1 (B:-1-177)
2c: SCOP_d2iz0c1 (C:2-177)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
automated matches
(50)
Protein domain
:
automated matches
(50)
Lactococcus lactis [TaxId: 1358]
(4)
1a
d2iz0a2
A:178-470
1b
d2iz0b2
B:178-470
1c
d2iz0c2
C:178-470
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Lactococcus lactis [TaxId: 1358]
(4)
2a
d2iz0a1
A:1-177
2b
d2iz0b1
B:-1-177
2c
d2iz0c1
C:2-177
[
close SCOP info
]
CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_2iz0B01 (B:-1-181)
1b: CATH_2iz0A01 (A:1-181)
1c: CATH_2iz0C01 (C:2-181)
2a: CATH_2iz0B02 (B:182-436)
2b: CATH_2iz0A02 (A:182-436)
2c: CATH_2iz0C02 (C:182-436)
3a: CATH_2iz0A03 (A:437-470)
3b: CATH_2iz0B03 (B:437-470)
3c: CATH_2iz0C03 (C:437-470)
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(
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(
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Lactococcus lactis. Organism_taxid: 1358. Strain: mg1363.
(4)
1a
2iz0B01
B:-1-181
1b
2iz0A01
A:1-181
1c
2iz0C01
C:2-181
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(60)
Homologous Superfamily
:
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(59)
Lactococcus lactis. Organism_taxid: 1358. Strain: mg1363.
(4)
2a
2iz0B02
B:182-436
2b
2iz0A02
A:182-436
2c
2iz0C02
C:182-436
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
6-Phosphogluconate Dehydrogenase, domain 3
(20)
Lactococcus lactis. Organism_taxid: 1358. Strain: mg1363.
(4)
3a
2iz0A03
A:437-470
3b
2iz0B03
B:437-470
3c
2iz0C03
C:437-470
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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