Chain A from PDB Type:PROTEIN Length:160
aligned with Q7DDI9_NEIMB | Q7DDI9 from UniProtKB/TrEMBL Length:167
Alignment length:163
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160
Q7DDI9_NEIMB 1 MSDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASA 163
SCOP domains d2is5a_ A: Hypothetical protein NMB1012 SCOP domains
CATH domains 2is5A00 A:1-163 Chitosa nase, subunit A, domain 1 CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhh..........---...ee..eehhhhhhh.........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2is5 A 1 ASDKFNQFINRVLSHEGGYANHP---GGETNWGITKRTAQANGYNGSmRAmTREQAISIYRKAFWERYRADQmPEAVAFQFFDACVNHGYGNAARmLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASA 163
10 20 | | 30 40 |50| 60 70 | 80 90 | 100 110 120 130 140 150 160
23 27 48-MSE 73-MSE 96-MSE
51-MSE
Chain B from PDB Type:PROTEIN Length:150
aligned with Q7DDI9_NEIMB | Q7DDI9 from UniProtKB/TrEMBL Length:167
Alignment length:161
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161
Q7DDI9_NEIMB 2 SDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHAS 162
SCOP domains d2is5b_ B: Hypothet i cal protein NMB1012 SCOP domains
CATH domains 2is5B00 B:2-162 Chi t osanase, subunit A, domain 1 CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhh.......-.----...ee..eehhhhhhh.........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhh..hhhhhhhhhhhhhhhhhhh.------hhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2is5 B 2 SDKFNQFINRVLSHEGGYA-H----GGETNWGITKRTAQANGYNGSmRAmTREQAISIYRKAFWERYRADQmPEAVAFQFFDACVNHGYGNAARmLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKL------GKGWVRRVAQNLIHAS 162
11 |-| | 31 41 | 51 61 71 | 81 91 | 101 111 121 131 |- | 151 161
20 | 27 48-MSE 73-MSE 96-MSE 140 147
22 51-MSE
Chain C from PDB Type:PROTEIN Length:134
aligned with Q7DDI9_NEIMB | Q7DDI9 from UniProtKB/TrEMBL Length:167
Alignment length:163
1
| 9 19 29 39 49 59 69 79 89 99 109 119 129 139 149 159
Q7DDI9_NEIMB - -MSDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHAS 162
SCOP domains d2is5c_ C: Hyp othetical pr otein NMB1012 SCOP domains
CATH domains 2is5C00 C:0-16 2 Chitosanas e, subunit A, domain 1 CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...hhhhhhhhhhh-------------------..hhhhhhhh..-------hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....---hhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2is5 C 0 NASDKFNQFINRVL-------------------GITKRTAQANGY-------TREQAISIYRKAFWERYRADQmPEAVAFQFFDACVNHGYGNAARmLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTF---GKGWVRRVAQNLIHAS 162
9 | - - | 39 | - | 59 69 | 79 89 | 99 109 119 129 139 | 149 159
13 33 44 52 73-MSE 96-MSE 143 147
Chain D from PDB Type:PROTEIN Length:147
aligned with Q7DDI9_NEIMB | Q7DDI9 from UniProtKB/TrEMBL Length:167
Alignment length:162
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162
Q7DDI9_NEIMB 3 DKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASAD 164
SCOP domains d2is5d_ D: Hypoth e tical protein NMB1012 SCOP domains
CATH domains 2is5D00 D:3-164 C h itosanase, subunit A, domain 1 CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author hhhhhhhhhhh......--.-----..ee..eehhhhhhh.........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.--------hhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2is5 D 3 DKFNQFINRVLSHEGGY--H-----GETNWGITKRTAQANGYNGSmRAmTREQAISIYRKAFWERYRADQmPEAVAFQFFDACVNHGYGNAARmLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKL--------GWVRRVAQNLIHASAD 164
12 | 22 | 32 42 | 52 62 72| 82 92 | 102 112 122 132 | - |152 162
19 22 28 48-MSE 73-MSE 96-MSE 140 149
51-MSE
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |