Chain A from PDB Type:PROTEIN Length:163
aligned with Q7DDI9_NEIMB | Q7DDI9 from UniProtKB/TrEMBL Length:167
Alignment length:163
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160
Q7DDI9_NEIMB 1 MSDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASA 163
SCOP domains d2ikba1 A:1-163 Hypothetical protein NMB1012 SCOP domains
CATH domains -2ikbA00 A:2-163 Chitosanase, subunit A, domain 1 CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhh...........hhhh.ee..eehhhhhhh....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2ikb A 1 mSDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSmRAmTREQAISIYRKAFWERYRADQmPEAVAFQFFDACVNHGYGNAARmLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASA 163
| 10 20 30 40 |50| 60 70 | 80 90 | 100 110 120 130 140 150 160
| 48-MSE 73-MSE 96-MSE
1-MSE 51-MSE
Chain B from PDB Type:PROTEIN Length:154
aligned with Q7DDI9_NEIMB | Q7DDI9 from UniProtKB/TrEMBL Length:167
Alignment length:161
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162
Q7DDI9_NEIMB 3 DKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASA 163
SCOP domains d2ikbb_ B: automated matches SCOP domains
CATH domains 2ikbB00 B:3-163 Chitosanase, subunit A, domain 1 CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhh...........hhhh.ee..eehhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh-------hhhhhhhhhhhhhhh. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2ikb B 3 DKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSmRAmTREQAISIYRKAFWERYRADQmPEAVAFQFFDACVNHGYGNAARmLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKL-------KGWVRRVAQNLIHASA 163
12 22 32 42 | 52 62 72| 82 92 | 102 112 122 132 | - | 152 162
48-MSE 73-MSE 96-MSE 140 148
51-MSE
Chain C from PDB Type:PROTEIN Length:162
aligned with Q7DDI9_NEIMB | Q7DDI9 from UniProtKB/TrEMBL Length:167
Alignment length:164
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160
Q7DDI9_NEIMB 1 MSDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASAD 164
SCOP domains d2ikbc_ C: automated ma tches SCOP domains
CATH domains -2ikbC00 C:2-164 Chitos anase, subunit A, domain 1 CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhhhh..........--....ee..eehhhhhh..........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2ikb C 1 mSDKFNQFINRVLSHEGGYANHP--PGGETNWGITKRTAQANGYNGSmRAmTREQAISIYRKAFWERYRADQmPEAVAFQFFDACVNHGYGNAARmLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASAD 164
| 10 20 | | 30 40 |50| 60 70 | 80 90 | 100 110 120 130 140 150 160
1-MSE 23 26 48-MSE 73-MSE 96-MSE
51-MSE
Chain D from PDB Type:PROTEIN Length:163
aligned with Q7DDI9_NEIMB | Q7DDI9 from UniProtKB/TrEMBL Length:167
Alignment length:164
11 21 31 41 51 61 71 81 91 101 111 121 131 141 151 161
Q7DDI9_NEIMB 2 SDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSMRAMTREQAISIYRKAFWERYRADQMPEAVAFQFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTKLGTFTSFGKGWVRRVAQNLIHASADN 165
SCOP domains d2ikbd_ D: automated matches SCOP domains
CATH domains 2ikbD00 D:2-165 Chitosanase, subunit A, domain 1 CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhh...........hhhh.ee..eehhhhhh..........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2ikb D 2 SDKFNQFINRVLSHEGGYANHPKDPGGETNWGITKRTAQANGYNGSmRAmTREQAISIYRKAFWERYRADQmPEAVAFQFFDACVNHGYGNAARmLQRAAGVPDDGVIGAVSLKAINSLPENDLLLRFNAERLVFYTK-GTFTSFGKGWVRRVAQNLIHASADN 165
11 21 31 41 | 51 61 71 | 81 91 | 101 111 121 131 141 151 161
48-MSE 73-MSE 96-MSE 139 |
51-MSE 141
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |