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(-) Description

Title :  CRYSTAL STRUCTURE OF PLAUTIA STALI INTESTINE VIRUS INTERGENIC REGION INTERNAL RIBOSOME ENTRY SITE RIBOSOMAL BINDING DOMAIN RNA AT 3.1 ANGSTROMS
 
Authors :  J. S. Pfingsten, D. A. Costantino, J. S. Kieft
Date :  02 Oct 06  (Deposition) - 13 Feb 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,M
Keywords :  Rna; Ires; Ribosomal Binding Domain; Psiv; Under Wound Helix; Double-Nested Pseudoknot (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. S. Pfingsten, D. A. Costantino, J. S. Kieft
Structural Basis For Ribosome Recruitment And Manipulation By A Viral Ires Rna
Science V. 314 1450 2006
PubMed-ID: 17124290  |  Reference-DOI: 10.1126/SCIENCE.1133281
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RIBOSOMAL BINDING DOMAIN OF THE IRES RNA
    Chains: A, M
    Engineered: YES
    Other Details: RESIDUES 6084, INS. CODE A-F, AND 6119, INS. CODE A-E, ARE INSERTED TO INDUCE CRYSTALLIZATION
    Other Details - Source: SEQUENCE OCCURS NATURALLY IN PLAUTIA STALI INTESTINE VIRUS
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AM

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:RNA  Length:135
                                                                                                                                                                         
               2il9 A  6003 CUGACUAUGUGAUCUUAUUAAAAUUAGGUUAAACGAGGUUAAAAAUAGUUUUAAUAUUGCUAUAGUAGAGGUCUUGCGAAAGCUUACCACACAAGAUGGACCGGAGCGAAAGCUCCAAUAUCUAGUGUACCCUCG  6146
                                  6012      6022      6032  ||  6045      6055      6065     |6078     6084D|||   6102      6112     6119C|||   6131      6141     
                                                         6035|                            6071|     6084A||||||                    6119A|||||                      
                                                          6039                             6075      6084B|||||                     6119B||||                      
                                                                                                      6084C||||                      6119C|||                      
                                                                                                       6084D|||                       6119D||                      
                                                                                                        6084E||                        6119E|                      
                                                                                                         6084F|                          6124                      
                                                                                                           6095                                                    


Chain M from PDB  Type:RNA  Length:132
                                                                                                                                                                      
               2il9 M  6003 CUGACUAUGUGAUCUUAUUAAAAUUAGGUUAAAUCGAGGUUAAAAAUAGUUUUAAUAUUGCUAAGAGGUCUUGCGAAAGCUUACCACACAAGAUGGACCGGAGCGAAAGCUCCAAUAUCUAGUGUACCCUCG  6146
                                  6012      6022      6032   || 6044      6054      6064  ||  6081   |||6095      6105      6115    ||6124      6134      6144  
                                                          6036|                        6067|     6084A||||||                    6119A|||||                      
                                                           6039                         6075      6084B|||||                     6119B||||                      
                                                                                                   6084C||||                      6119C|||                      
                                                                                                    6084D|||                       6119D||                      
                                                                                                     6084E||                        6119E|                      
                                                                                                      6084F|                          6124                      
                                                                                                        6095
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