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Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURE OF L-AMINO ACID OXIDASE FROM CALLOSELASMA RHODOSTOMA IN COMPLEX WITH L-PHENYLALANINE

Authors :   I. M. Moustafa, S. Foster, A. Y. Lyubimov, A. Vrielink

Date :   27 Sep 06 (Deposition) - 31 Oct 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)

Keywords :   Flavoenzyme, Fad Binding Domain, Reaction Mechanism, Sustrate Binding, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. M. Moustafa, S. Foster, A. Y. Lyubimov, A. Vrielink
Crystal Structure Of Laao From Calloselasma Rhodostoma With An L-Phenylalanine Substrate: Insights Into Structure And Mechanism
J. Mol. Biol. V. 364 991 2006
PubMed-ID: 17046020 | Reference-DOI: 10.1016/J.JMB.2006.09.032

Molecule 1 - L-AMINO-ACID OXIDASE
	Chains	:	A, B, C, D
	EC Number	:	1.4.3.2
	Organism Common	:	MALAYAN PIT VIPER
	Organism Scientific	:	CALLOSELASMA RHODOSTOMA
	Organism Taxid	:	8717
	Secretion	:	VENOM
	Synonym	:	LAO, LAAO, APOXIN I

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 19)

No.	Name	Count	Type	Full Name
1	FAD	4	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FUC	3	Ligand/Ion	ALPHA-L-FUCOSE
3	NAG	8	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	PHE	4	Mod. Amino Acid	PHENYLALANINE

Biological Unit 1 (4, 10)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
3	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	PHE	2	Mod. Amino Acid	PHENYLALANINE

Biological Unit 2 (4, 9)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
3	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	PHE	2	Mod. Amino Acid	PHENYLALANINE

Asymmetric Unit (19, 19)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:172 , TYR A:175 , FUC A:525 , HOH A:974	BINDING SITE FOR RESIDUE NAG A 523
02	AC2	SOFTWARE	ARG A:170 , NAG A:523	BINDING SITE FOR RESIDUE FUC A 525
03	AC3	SOFTWARE	ASN A:110 , HIS A:342 , ASN A:359 , ASN A:361 , HOH A:735 , HOH A:858 , HOH A:995 , HOH A:1024 , HOH A:1031	BINDING SITE FOR RESIDUE NAG A 522
04	AC4	SOFTWARE	ASN B:172	BINDING SITE FOR RESIDUE NAG B 523
05	AC5	SOFTWARE	ASN B:110 , HIS B:342 , ASN B:359 , ASN B:361 , HOH B:868 , HOH B:871 , HOH B:1010 , HOH B:1035 , HOH B:1048	BINDING SITE FOR RESIDUE NAG B 522
06	AC6	SOFTWARE	ASN C:172 , TYR C:175 , FUC C:525 , HOH D:905	BINDING SITE FOR RESIDUE NAG C 523
07	AC7	SOFTWARE	ARG C:170 , NAG C:523 , ASN D:25 , HOH D:915	BINDING SITE FOR RESIDUE FUC C 525
08	AC8	SOFTWARE	ASN C:110 , HIS C:342 , ASN C:359 , ASN C:361 , HOH C:676 , HOH C:829 , HOH C:1006	BINDING SITE FOR RESIDUE NAG C 522
09	AC9	SOFTWARE	HOH C:771 , HOH C:822 , HOH C:1049 , ASN D:172 , TYR D:175 , FUC D:525	BINDING SITE FOR RESIDUE NAG D 523
10	BC1	SOFTWARE	ARG C:24 , ASN C:25 , HOH C:702 , HOH C:771 , NAG D:523	BINDING SITE FOR RESIDUE FUC D 525
11	BC2	SOFTWARE	ASN D:110 , HIS D:342 , ASN D:359 , ASN D:361 , HOH D:775	BINDING SITE FOR RESIDUE NAG D 522
12	BC3	SOFTWARE	ARG A:90 , HIS A:223 , ARG A:322 , TYR A:372 , ILE A:374 , ILE A:430 , GLY A:464 , TRP A:465 , FAD A:527 , HOH A:653 , HOH A:1007	BINDING SITE FOR RESIDUE PHE A 526
13	BC4	SOFTWARE	ARG B:90 , HIS B:223 , ARG B:322 , TYR B:372 , ILE B:374 , ILE B:430 , GLY B:464 , TRP B:465 , FAD B:525 , HOH B:602	BINDING SITE FOR RESIDUE PHE B 524
14	BC5	SOFTWARE	ARG C:90 , HIS C:223 , PHE C:227 , ARG C:322 , TYR C:372 , ILE C:374 , ILE C:430 , GLY C:464 , TRP C:465 , FAD C:527 , HOH C:564	BINDING SITE FOR RESIDUE PHE C 526
15	BC6	SOFTWARE	ARG D:90 , HIS D:223 , ARG D:322 , TYR D:372 , ILE D:374 , ILE D:430 , GLY D:464 , TRP D:465 , FAD D:527 , HOH D:648	BINDING SITE FOR RESIDUE PHE D 526
16	BC7	SOFTWARE	VAL A:39 , GLY A:40 , GLY A:42 , MET A:43 , ALA A:44 , LEU A:62 , GLU A:63 , ALA A:64 , GLY A:70 , ARG A:71 , VAL A:72 , GLY A:87 , PRO A:88 , MET A:89 , ARG A:90 , LEU A:91 , ALA A:259 , GLN A:260 , VAL A:261 , CYS A:293 , THR A:294 , THR A:295 , TYR A:372 , TRP A:420 , TYR A:425 , GLY A:429 , ILE A:430 , GLY A:456 , GLU A:457 , GLY A:464 , TRP A:465 , ILE A:466 , THR A:469 , PHE A:526 , HOH A:529 , HOH A:533 , HOH A:540 , HOH A:548 , HOH A:549 , HOH A:550 , HOH A:551 , HOH A:553 , HOH A:564 , HOH A:653	BINDING SITE FOR RESIDUE FAD A 527
17	BC8	SOFTWARE	VAL B:39 , GLY B:40 , GLY B:42 , MET B:43 , ALA B:44 , LEU B:62 , GLU B:63 , ALA B:64 , GLY B:69 , GLY B:70 , ARG B:71 , VAL B:72 , GLY B:87 , PRO B:88 , MET B:89 , ARG B:90 , LEU B:91 , ALA B:259 , VAL B:261 , CYS B:293 , THR B:294 , THR B:295 , TYR B:372 , TRP B:420 , TYR B:425 , GLY B:429 , ILE B:430 , GLY B:456 , GLU B:457 , GLY B:464 , TRP B:465 , ILE B:466 , THR B:469 , PHE B:524 , HOH B:526 , HOH B:527 , HOH B:530 , HOH B:532 , HOH B:534 , HOH B:535 , HOH B:553 , HOH B:557 , HOH B:572 , HOH B:602	BINDING SITE FOR RESIDUE FAD B 525
18	BC9	SOFTWARE	VAL C:39 , GLY C:40 , GLY C:42 , MET C:43 , ALA C:44 , LEU C:62 , GLU C:63 , ALA C:64 , GLY C:70 , ARG C:71 , VAL C:72 , PRO C:88 , MET C:89 , ARG C:90 , LEU C:91 , ALA C:259 , VAL C:261 , CYS C:293 , THR C:294 , THR C:295 , TYR C:372 , TRP C:420 , TYR C:425 , GLY C:429 , ILE C:430 , GLY C:456 , GLU C:457 , GLY C:464 , TRP C:465 , ILE C:466 , THR C:469 , PHE C:526 , HOH C:528 , HOH C:531 , HOH C:534 , HOH C:538 , HOH C:540 , HOH C:542 , HOH C:543 , HOH C:557 , HOH C:564 , HOH C:574 , HOH C:589	BINDING SITE FOR RESIDUE FAD C 527
19	CC1	SOFTWARE	VAL D:39 , GLY D:40 , GLY D:42 , MET D:43 , ALA D:44 , LEU D:62 , GLU D:63 , ALA D:64 , GLY D:70 , ARG D:71 , VAL D:72 , GLY D:87 , PRO D:88 , MET D:89 , ARG D:90 , LEU D:91 , ALA D:259 , VAL D:261 , CYS D:293 , THR D:294 , THR D:295 , ALA D:298 , TYR D:372 , TRP D:420 , TYR D:425 , GLY D:429 , ILE D:430 , GLY D:456 , GLU D:457 , GLY D:464 , TRP D:465 , ILE D:466 , THR D:469 , PHE D:526 , HOH D:528 , HOH D:536 , HOH D:540 , HOH D:541 , HOH D:553 , HOH D:558 , HOH D:564 , HOH D:603 , HOH D:606 , HOH D:648	BINDING SITE FOR RESIDUE FAD D 527

Asymmetric Unit

No.	Residues
1	A:10	-	A:173
2	A:331	-	A:412
3	B:10	-	B:173
4	B:331	-	B:412
5	C:10	-	C:173
6	C:331	-	C:412
7	D:10	-	D:173
8	D:331	-	D:412

Asymmetric Unit

No.	Residues
1	Asn A:305	-	Pro A:306
2	Asn B:305	-	Pro B:306
3	Asn C:305	-	Pro C:306
4	Asn D:305	-	Pro D:306

(no "SAP(SNP)/Variant" information available for 2IID)

(no "PROSITE Motif" information available for 2IID)

(no "Exon" information available for 2IID)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:483
 aligned with OXLA_CALRH | P81382 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:483
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501   
           OXLA_CALRH    22 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN 504
               SCOP domains d2iida1 A:4-319,A:433-486 L-aminoacid oxidase                                                                                                                                                                                                                                                                               d2iida2 A:320-432 L-aminoacid oxidase                                                                            d2iida1 A:4-319,A:433-486 L-aminoacid oxidase          SCOP domains
               CATH domains 2iidA01               ---------2iidA02                       --------2iidA01 A:4-25,A:73-129,A:233-236,A:324-420              2iidA03 A:130-230 Guanine Nucleotide Dissociation Inhibitor, domain 1                                --2iid-----2iidA02 A:35-64,A:242-318,A:446-486  [code=3.50.50.60, no name defined]      -----2iidA01 A:4-25,A:73-129,A:233-236,A:324-420  [code=3.90.660.10, no name defined]                 -------------------------2iidA02 A:35-64,A:242-318,A:446-486       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh..hhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhhh.eeeee...........eeee....eeee.....ee..hhhhhhhhhhh...eeee.......eeee..eeeehhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhh....eeee....hhhhhhhhhhh...ee...eeeeeee....eeeeee.......eeee.eeee..hhhhhh..eee...hhhhhhhhhhh.ee.eeeeeeee..hhhhhhh....eeee.....eee..........eeeeeeeehhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeeee.hhh......ee....hhhhhhhhhhhh....eee.hhhhh....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iid A   4 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN 486
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483

Chain B from PDB  Type:PROTEIN  Length:483
 aligned with OXLA_CALRH | P81382 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:483
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501   
           OXLA_CALRH    22 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN 504
               SCOP domains d2iidb1 B:4-319,B:433-486 L-aminoacid oxidase                                                                                                                                                                                                                                                                               d2iidb2 B:320-432 L-aminoacid oxidase                                                                            d2iidb1 B:4-319,B:433-486 L-aminoacid oxidase          SCOP domains
               CATH domains 2iidB01               ---------2iidB02                       --------2iidB01 B:4-25,B:73-129,B:233-236,B:324-420              2iidB03 B:130-230 Guanine Nucleotide Dissociation Inhibitor, domain 1                                --2iid-----2iidB02 B:35-64,B:242-318,B:446-486  [code=3.50.50.60, no name defined]      -----2iidB01 B:4-25,B:73-129,B:233-236,B:324-420  [code=3.90.660.10, no name defined]                 -------------------------2iidB02 B:35-64,B:242-318,B:446-486       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh..hhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh..eeeee...........eeee....eeee.....ee..hhhhhhhhhhh...eeee.......eeee..eeeehhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhh....eeee....hhhhhhhhhhh...ee...eeeeeeee..eeeeeee.......eeee.eeee..hhhhhh..eee...hhhhhhhhhhh.ee.eeeeeeee..hhhhhhh....eeee.....eee..........eeeeeeeehhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeeee.hhh......ee....hhhhhhhhhhhh....eee.hhhhh....hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iid B   4 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN 486
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483

Chain C from PDB  Type:PROTEIN  Length:483
 aligned with OXLA_CALRH | P81382 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:483
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501   
           OXLA_CALRH    22 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN 504
               SCOP domains d2iidc1 C:4-319,C:433-486 L-aminoacid oxidase                                                                                                                                                                                                                                                                               d2iidc2 C:320-432 L-aminoacid oxidase                                                                            d2iidc1 C:4-319,C:433-486 L-aminoacid oxidase          SCOP domains
               CATH domains 2iidC01               ---------2iidC02                       --------2iidC01 C:4-25,C:73-129,C:233-236,C:324-420              2iidC03 C:130-230 Guanine Nucleotide Dissociation Inhibitor, domain 1                                --2iid-----2iidC02 C:35-64,C:242-318,C:446-486  [code=3.50.50.60, no name defined]      -----2iidC01 C:4-25,C:73-129,C:233-236,C:324-420  [code=3.90.660.10, no name defined]                 -------------------------2iidC02 C:35-64,C:242-318,C:446-486       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh..hhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh..eeeee...........eeee....eeee.....ee..hhhhhhhhhhh...eeee.......eeee..eeeehhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhh....eeee....hhhhhhhhhhh...ee...eeeeeee....eeeeee.......eeee.eeee..hhhhhh..eee...hhhhhhhhhhh.ee.eeeeeeee..hhhhhhh....eeee.....eee..........eeeeeeeehhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeeee.hhh......ee....hhhhhhhhhhhh....eee.hhhhh....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iid C   4 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN 486
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483

Chain D from PDB  Type:PROTEIN  Length:483
 aligned with OXLA_CALRH | P81382 from UniProtKB/Swiss-Prot  Length:516

    Alignment length:483
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501   
           OXLA_CALRH    22 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN 504
               SCOP domains d2iidd1 D:4-319,D:433-486 L-aminoacid oxidase                                                                                                                                                                                                                                                                               d2iidd2 D:320-432 L-aminoacid oxidase                                                                            d2iidd1 D:4-319,D:433-486 L-aminoacid oxidase          SCOP domains
               CATH domains 2iidD01               ---------2iidD02                       --------2iidD01 D:4-25,D:73-129,D:233-236,D:324-420              2iidD03 D:130-230 Guanine Nucleotide Dissociation Inhibitor, domain 1                                --2iid-----2iidD02 D:35-64,D:242-318,D:446-486  [code=3.50.50.60, no name defined]      -----2iidD01 D:4-25,D:73-129,D:233-236,D:324-420  [code=3.90.660.10, no name defined]                 -------------------------2iidD02 D:35-64,D:242-318,D:446-486       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh..hhhhhhhhhhhh........eeeee..hhhhhhhhhhhhhh..eeeee...........eeee....eeee.....ee..hhhhhhhhhhh...eeee.......eeee..eeeehhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh...hhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhh....eeee....hhhhhhhhhhh...ee...eeeeeee....eeeeee.......eeee.eeee..hhhhhh..eee...hhhhhhhhhhh.ee.eeeeeeee..hhhhhhh....eeee.....eee..........eeeeeeeehhhhhh....hhhhhhhhhhhhhhhhhh.hhhhhhhheeeeeeee.hhh......ee....hhhhhhhhhhhh....eee.hhhhh....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iid D   4 RNPLAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLASEN 486
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: FAD-linked reductases, C-terminal domain (181)

Superfamily: FAD-linked reductases, C-terminal domain (181)

Family: L-aminoacid/polyamine oxidase (66)

Protein domain: L-aminoacid oxidase (7)

Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717] (3)

1a	d2iida2	A:320-432
1b	d2iidb2	B:320-432
1c	d2iidc2	C:320-432
1d	d2iidd2	D:320-432

Class: Alpha and beta proteins (a/b) (23833)

Fold: FAD/NAD(P)-binding domain (331)

Superfamily: FAD/NAD(P)-binding domain (331)

Family: FAD-linked reductases, N-terminal domain (156)

Protein domain: L-aminoacid oxidase (7)

Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717] (3)

2a	d2iida1	A:4-319,A:433-486
2b	d2iidb1	B:4-319,B:433-486
2c	d2iidc1	C:4-319,C:433-486
2d	d2iidd1	D:4-319,D:433-486

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(bba) Sandwich (528)

Topology: FAD/NAD(P)-binding domain (373)

Homologous Superfamily: [code=3.50.50.60, no name defined] (373)

Malayan pit viper (Calloselasma rhodostoma) (3)

1a	2iidA02	A:35-64,A:242-318,A:446-486
1b	2iidB02	B:35-64,B:242-318,B:446-486
1c	2iidC02	C:35-64,C:242-318,C:446-486
1d	2iidD02	D:35-64,D:242-318,D:446-486

Architecture: Alpha-Beta Complex (3881)

Topology: Polyamine Oxidase; Chain A, domain 2 (62)

Homologous Superfamily: [code=3.90.660.10, no name defined] (61)

Malayan pit viper (Calloselasma rhodostoma) (3)

2a	2iidA01	A:4-25,A:73-129,A:233-236,A:324-420
2b	2iidB01	B:4-25,B:73-129,B:233-236,B:324-420
2c	2iidC01	C:4-25,C:73-129,C:233-236,C:324-420
2d	2iidD01	D:4-25,D:73-129,D:233-236,D:324-420

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Guanine Nucleotide Dissociation Inhibitor; domain 1 (50)

Homologous Superfamily: Guanine Nucleotide Dissociation Inhibitor, domain 1 (50)

Malayan pit viper (Calloselasma rhodostoma) (3)

3a	2iidA03	A:130-230
3b	2iidB03	B:130-230
3c	2iidC03	C:130-230
3d	2iidD03	D:130-230

(no "Pfam Domain" information available for 2IID)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (OXLA_CALRH | P81382)

molecular function
	GO:0001716	L-amino-acid oxidase activity	Catalysis of the reaction: a L-amino acid + H2O + O2 = a 2-oxo acid + NH3 + hydrogen peroxide.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0006915	apoptotic process	A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
	GO:0019835	cytolysis	The rupture of cell membranes and the loss of cytoplasm.
	GO:0042742	defense response to bacterium	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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UniProtKB/Swiss-Prot
	OXLA_CALRH \| P81382	:	1f8r 1f8s

1f8r	WILD TYPE L-AMINO ACID OXIDASE STRUCTURE.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 19)

Sites (19, 19)

SS Bonds (8, 8)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (2, 8)

CATH Domains (3, 12)

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