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2IID
Asym. Unit
Info
Asym.Unit (371 KB)
Biol.Unit 1 (186 KB)
Biol.Unit 2 (185 KB)
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(1)
Title
:
STRUCTURE OF L-AMINO ACID OXIDASE FROM CALLOSELASMA RHODOSTOMA IN COMPLEX WITH L-PHENYLALANINE
Authors
:
I. M. Moustafa, S. Foster, A. Y. Lyubimov, A. Vrielink
Date
:
27 Sep 06 (Deposition) - 31 Oct 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Flavoenzyme, Fad Binding Domain, Reaction Mechanism, Sustrate Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. M. Moustafa, S. Foster, A. Y. Lyubimov, A. Vrielink
Crystal Structure Of Laao From Calloselasma Rhodostoma With An L-Phenylalanine Substrate: Insights Into Structure And Mechanism
J. Mol. Biol. V. 364 991 2006
[
close entry info
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
2c: ALPHA-L-FUCOSE (FUCc)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4a: PHENYLALANINE (PHEa)
4b: PHENYLALANINE (PHEb)
4c: PHENYLALANINE (PHEc)
4d: PHENYLALANINE (PHEd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
FUC
3
Ligand/Ion
ALPHA-L-FUCOSE
3
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PHE
4
Mod. Amino Acid
PHENYLALANINE
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:172 , TYR A:175 , FUC A:525 , HOH A:974
BINDING SITE FOR RESIDUE NAG A 523
02
AC2
SOFTWARE
ARG A:170 , NAG A:523
BINDING SITE FOR RESIDUE FUC A 525
03
AC3
SOFTWARE
ASN A:110 , HIS A:342 , ASN A:359 , ASN A:361 , HOH A:735 , HOH A:858 , HOH A:995 , HOH A:1024 , HOH A:1031
BINDING SITE FOR RESIDUE NAG A 522
04
AC4
SOFTWARE
ASN B:172
BINDING SITE FOR RESIDUE NAG B 523
05
AC5
SOFTWARE
ASN B:110 , HIS B:342 , ASN B:359 , ASN B:361 , HOH B:868 , HOH B:871 , HOH B:1010 , HOH B:1035 , HOH B:1048
BINDING SITE FOR RESIDUE NAG B 522
06
AC6
SOFTWARE
ASN C:172 , TYR C:175 , FUC C:525 , HOH D:905
BINDING SITE FOR RESIDUE NAG C 523
07
AC7
SOFTWARE
ARG C:170 , NAG C:523 , ASN D:25 , HOH D:915
BINDING SITE FOR RESIDUE FUC C 525
08
AC8
SOFTWARE
ASN C:110 , HIS C:342 , ASN C:359 , ASN C:361 , HOH C:676 , HOH C:829 , HOH C:1006
BINDING SITE FOR RESIDUE NAG C 522
09
AC9
SOFTWARE
HOH C:771 , HOH C:822 , HOH C:1049 , ASN D:172 , TYR D:175 , FUC D:525
BINDING SITE FOR RESIDUE NAG D 523
10
BC1
SOFTWARE
ARG C:24 , ASN C:25 , HOH C:702 , HOH C:771 , NAG D:523
BINDING SITE FOR RESIDUE FUC D 525
11
BC2
SOFTWARE
ASN D:110 , HIS D:342 , ASN D:359 , ASN D:361 , HOH D:775
BINDING SITE FOR RESIDUE NAG D 522
12
BC3
SOFTWARE
ARG A:90 , HIS A:223 , ARG A:322 , TYR A:372 , ILE A:374 , ILE A:430 , GLY A:464 , TRP A:465 , FAD A:527 , HOH A:653 , HOH A:1007
BINDING SITE FOR RESIDUE PHE A 526
13
BC4
SOFTWARE
ARG B:90 , HIS B:223 , ARG B:322 , TYR B:372 , ILE B:374 , ILE B:430 , GLY B:464 , TRP B:465 , FAD B:525 , HOH B:602
BINDING SITE FOR RESIDUE PHE B 524
14
BC5
SOFTWARE
ARG C:90 , HIS C:223 , PHE C:227 , ARG C:322 , TYR C:372 , ILE C:374 , ILE C:430 , GLY C:464 , TRP C:465 , FAD C:527 , HOH C:564
BINDING SITE FOR RESIDUE PHE C 526
15
BC6
SOFTWARE
ARG D:90 , HIS D:223 , ARG D:322 , TYR D:372 , ILE D:374 , ILE D:430 , GLY D:464 , TRP D:465 , FAD D:527 , HOH D:648
BINDING SITE FOR RESIDUE PHE D 526
16
BC7
SOFTWARE
VAL A:39 , GLY A:40 , GLY A:42 , MET A:43 , ALA A:44 , LEU A:62 , GLU A:63 , ALA A:64 , GLY A:70 , ARG A:71 , VAL A:72 , GLY A:87 , PRO A:88 , MET A:89 , ARG A:90 , LEU A:91 , ALA A:259 , GLN A:260 , VAL A:261 , CYS A:293 , THR A:294 , THR A:295 , TYR A:372 , TRP A:420 , TYR A:425 , GLY A:429 , ILE A:430 , GLY A:456 , GLU A:457 , GLY A:464 , TRP A:465 , ILE A:466 , THR A:469 , PHE A:526 , HOH A:529 , HOH A:533 , HOH A:540 , HOH A:548 , HOH A:549 , HOH A:550 , HOH A:551 , HOH A:553 , HOH A:564 , HOH A:653
BINDING SITE FOR RESIDUE FAD A 527
17
BC8
SOFTWARE
VAL B:39 , GLY B:40 , GLY B:42 , MET B:43 , ALA B:44 , LEU B:62 , GLU B:63 , ALA B:64 , GLY B:69 , GLY B:70 , ARG B:71 , VAL B:72 , GLY B:87 , PRO B:88 , MET B:89 , ARG B:90 , LEU B:91 , ALA B:259 , VAL B:261 , CYS B:293 , THR B:294 , THR B:295 , TYR B:372 , TRP B:420 , TYR B:425 , GLY B:429 , ILE B:430 , GLY B:456 , GLU B:457 , GLY B:464 , TRP B:465 , ILE B:466 , THR B:469 , PHE B:524 , HOH B:526 , HOH B:527 , HOH B:530 , HOH B:532 , HOH B:534 , HOH B:535 , HOH B:553 , HOH B:557 , HOH B:572 , HOH B:602
BINDING SITE FOR RESIDUE FAD B 525
18
BC9
SOFTWARE
VAL C:39 , GLY C:40 , GLY C:42 , MET C:43 , ALA C:44 , LEU C:62 , GLU C:63 , ALA C:64 , GLY C:70 , ARG C:71 , VAL C:72 , PRO C:88 , MET C:89 , ARG C:90 , LEU C:91 , ALA C:259 , VAL C:261 , CYS C:293 , THR C:294 , THR C:295 , TYR C:372 , TRP C:420 , TYR C:425 , GLY C:429 , ILE C:430 , GLY C:456 , GLU C:457 , GLY C:464 , TRP C:465 , ILE C:466 , THR C:469 , PHE C:526 , HOH C:528 , HOH C:531 , HOH C:534 , HOH C:538 , HOH C:540 , HOH C:542 , HOH C:543 , HOH C:557 , HOH C:564 , HOH C:574 , HOH C:589
BINDING SITE FOR RESIDUE FAD C 527
19
CC1
SOFTWARE
VAL D:39 , GLY D:40 , GLY D:42 , MET D:43 , ALA D:44 , LEU D:62 , GLU D:63 , ALA D:64 , GLY D:70 , ARG D:71 , VAL D:72 , GLY D:87 , PRO D:88 , MET D:89 , ARG D:90 , LEU D:91 , ALA D:259 , VAL D:261 , CYS D:293 , THR D:294 , THR D:295 , ALA D:298 , TYR D:372 , TRP D:420 , TYR D:425 , GLY D:429 , ILE D:430 , GLY D:456 , GLU D:457 , GLY D:464 , TRP D:465 , ILE D:466 , THR D:469 , PHE D:526 , HOH D:528 , HOH D:536 , HOH D:540 , HOH D:541 , HOH D:553 , HOH D:558 , HOH D:564 , HOH D:603 , HOH D:606 , HOH D:648
BINDING SITE FOR RESIDUE FAD D 527
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2iida2 (A:320-432)
1b: SCOP_d2iidb2 (B:320-432)
1c: SCOP_d2iidc2 (C:320-432)
1d: SCOP_d2iidd2 (D:320-432)
2a: SCOP_d2iida1 (A:4-319,A:433-486)
2b: SCOP_d2iidb1 (B:4-319,B:433-486)
2c: SCOP_d2iidc1 (C:4-319,C:433-486)
2d: SCOP_d2iidd1 (D:4-319,D:433-486)
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)
(
)
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(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
L-aminoacid/polyamine oxidase
(66)
Protein domain
:
L-aminoacid oxidase
(7)
Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
(3)
1a
d2iida2
A:320-432
1b
d2iidb2
B:320-432
1c
d2iidc2
C:320-432
1d
d2iidd2
D:320-432
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
L-aminoacid oxidase
(7)
Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
(3)
2a
d2iida1
A:4-319,A:433-486
2b
d2iidb1
B:4-319,B:433-486
2c
d2iidc1
C:4-319,C:433-486
2d
d2iidd1
D:4-319,D:433-486
[
close SCOP info
]
CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_2iidA02 (A:35-64,A:242-318,A:446-486)
1b: CATH_2iidB02 (B:35-64,B:242-318,B:446-486)
1c: CATH_2iidC02 (C:35-64,C:242-318,C:446-486)
1d: CATH_2iidD02 (D:35-64,D:242-318,D:446-486)
2a: CATH_2iidA01 (A:4-25,A:73-129,A:233-236,A:324-420)
2b: CATH_2iidB01 (B:4-25,B:73-129,B:233-236,B:324-420)
2c: CATH_2iidC01 (C:4-25,C:73-129,C:233-236,C:324-420)
2d: CATH_2iidD01 (D:4-25,D:73-129,D:233-236,D:324-420)
3a: CATH_2iidA03 (A:130-230)
3b: CATH_2iidB03 (B:130-230)
3c: CATH_2iidC03 (C:130-230)
3d: CATH_2iidD03 (D:130-230)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Malayan pit viper (Calloselasma rhodostoma)
(3)
1a
2iidA02
A:35-64,A:242-318,A:446-486
1b
2iidB02
B:35-64,B:242-318,B:446-486
1c
2iidC02
C:35-64,C:242-318,C:446-486
1d
2iidD02
D:35-64,D:242-318,D:446-486
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Polyamine Oxidase; Chain A, domain 2
(62)
Homologous Superfamily
:
[code=3.90.660.10, no name defined]
(61)
Malayan pit viper (Calloselasma rhodostoma)
(3)
2a
2iidA01
A:4-25,A:73-129,A:233-236,A:324-420
2b
2iidB01
B:4-25,B:73-129,B:233-236,B:324-420
2c
2iidC01
C:4-25,C:73-129,C:233-236,C:324-420
2d
2iidD01
D:4-25,D:73-129,D:233-236,D:324-420
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Guanine Nucleotide Dissociation Inhibitor; domain 1
(50)
Homologous Superfamily
:
Guanine Nucleotide Dissociation Inhibitor, domain 1
(50)
Malayan pit viper (Calloselasma rhodostoma)
(3)
3a
2iidA03
A:130-230
3b
2iidB03
B:130-230
3c
2iidC03
C:130-230
3d
2iidD03
D:130-230
[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (371 KB)
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