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(-) Description

Title :  STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF FULL-LENGTH SPOVG FROM STAPHYLOCOCCUS EPIDERMIDIS ATCC 12228
 
Authors :  K. Tan, N. Maltseva, M. Bargassa, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  06 Sep 06  (Deposition) - 10 Oct 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Apc86317, Spovg, Staphylococcus Epidermidis Atcc 12228, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, N. Maltseva, M. Bargassa, A. Joachimiak
The Crystal Structure Of Spovg From Staphylococcus Epidermidis Atcc 12228
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE SEPTATION PROTEIN SPOVG
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: SPOVG, SE_2285
    Organism Scientific: STAPHYLOCOCCUS EPIDERMIDIS
    Organism Taxid: 176280
    Strain: ATCC 12228

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric/Biological Unit (2, 14)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:33 , ARG A:35 , PRO A:48 , SER A:49 , LYS B:50BINDING SITE FOR RESIDUE EDO A 103
2AC2SOFTWAREPHE A:44 , ALA A:46 , MSE A:47 , ASP B:74 , MSE B:77 , LYS B:78BINDING SITE FOR RESIDUE EDO A 104
3AC3SOFTWAREASP B:5 , SER B:22 , ILE B:23 , THR B:24 , GLU B:38BINDING SITE FOR RESIDUE EDO B 103
4AC4SOFTWAREVAL B:6 , ARG B:7 , LEU B:8 , THR B:83BINDING SITE FOR RESIDUE EDO B 104

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2I9Z)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2I9Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2I9Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2I9Z)

(-) Exons   (0, 0)

(no "Exon" information available for 2I9Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:87
 aligned with SP5G_STAES | Q8CML1 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:87
                                    10        20        30        40        50        60        70        80       
            SP5G_STAES    1 MKVTDVRLRKIQTDGRMKALVSITLDEAFVIHDLRVIEGNSGLFVAMPSKRTPDGEFRDIAHPINSDMRQEIQDAVMKVYDETDEVI 87
               SCOP domains d2i9za1 A:1-87 Putative septation protein SpoVG                                         SCOP domains
               CATH domains -2i9zA00 A:2-87 SpoVG-like domains                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee......eeeeeeeee...eeeeeeeeeee..eeeee..eee.....eee.eee.hhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                  2i9z A  1 mKVTDVRLRKIQTDGRmKALVSITLDEAFVIHDLRVIEGNSGLFVAmPSKRTPDGEFRDIAHPINSDmRQEIQDAVmKVYDETDEVI 87
                            |       10      | 20        30        40      | 50        60       |70      | 80       
                            |              17-MSE                        47-MSE               68-MSE   77-MSE      
                            1-MSE                                                                                  


Chain B from PDB  Type:PROTEIN  Length:84
 aligned with SP5G_STAES | Q8CML1 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:84
                                    10        20        30        40        50        60        70        80    
            SP5G_STAES    1 MKVTDVRLRKIQTDGRMKALVSITLDEAFVIHDLRVIEGNSGLFVAMPSKRTPDGEFRDIAHPINSDMRQEIQDAVMKVYDETD 84
               SCOP domains d2i9zb_ B: Putative septation protein SpoVG                                          SCOP domains
               CATH domains -2i9zB00 B:2-84 SpoVG-like domains                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeee......eeeeeeeee...eeeeeeeee......eee..eee.....eee.eee.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                  2i9z B  1 mKVTDVRLRKIQTDGRmKALVSITLDEAFVIHDLRVIEGNSGLFVAmPSKRTPDGEFRDIAHPINSDmRQEIQDAVmKVYDETD 84
                            |       10      | 20        30        40      | 50        60       |70      | 80    
                            1-MSE          17-MSE                        47-MSE               68-MSE   77-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2I9Z)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (SP5G_STAES | Q8CML1)
biological process
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0030435    sporulation resulting in formation of a cellular spore    The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.

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