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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNCHARACTERIZED CONSERVED PROTEIN OF COG5646 (ZP_00384875.1) FROM LACTOBACILLUS CASEI ATCC 334 AT 1.69 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  01 Sep 06  (Deposition) - 19 Sep 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.69
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Zp_00384875. 1, Uncharacterized Conserved Protein Of Cog5646, Structural Genomics, Psi-2, Protein Structure Initiative, Joint Center For Structural Genomics, Jcsg, Structural Genomics-Unknown Function Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of An Uncharacterized Conserved Protein O Cog5646 (Zp_00384875. 1) From Lactobacillus Casei Atcc 334 A 1. 69 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED CONSERVED PROTEIN OF COG5646
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: LACTOBACILLUS CASEI
    Organism Taxid: 1582

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 15)

Asymmetric/Biological Unit (4, 15)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2GOL3Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4UNL1Ligand/IonUNKNOWN LIGAND

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE B:119 , TRP B:120 , ARG B:122BINDING SITE FOR RESIDUE CL B 123
2AC2SOFTWARETHR A:118 , PHE A:119 , TRP A:120 , ARG A:122BINDING SITE FOR RESIDUE CL A 123
3AC3SOFTWAREARG B:73BINDING SITE FOR RESIDUE CL B 124
4AC4SOFTWAREALA A:65 , ARG A:90 , HOH A:204 , HOH A:208 , ASP B:84 , HIS B:85 , SER B:86 , ARG B:122 , HOH B:132BINDING SITE FOR RESIDUE UNL A 200
5AC5SOFTWAREASP A:84 , HIS A:85 , TRP A:120 , HOH A:203 , GOL B:126BINDING SITE FOR RESIDUE GOL A 201
6AC6SOFTWARELYS B:39 , TRP B:40BINDING SITE FOR RESIDUE GOL B 125
7AC7SOFTWAREHIS A:85 , SER A:86 , TRP A:120 , GOL A:201 , GLN B:42 , ALA B:65 , ARG B:90 , HOH B:129 , HOH B:283BINDING SITE FOR RESIDUE GOL B 126

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2I8D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2I8D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2I8D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2I8D)

(-) Exons   (0, 0)

(no "Exon" information available for 2I8D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:121
 aligned with Q035U5_LACP3 | Q035U5 from UniProtKB/TrEMBL  Length:122

    Alignment length:121
                                    11        21        31        41        51        61        71        81        91       101       111       121 
         Q035U5_LACP3     2 GSLAEWYQRIPTPDDLTRVESLFANMQAQFPQLKLEFKWNQPMFTDHGTFIMGFNPSKKHLAVAIEPQTMTRFIPQIDKAGYDHSQIIRFPWHKPLDEQLIHDLIAYTIDQKKDATTFWQR 122
               SCOP domains d2i8da1 A:2-122 Uncharacterized protein LSEI2283                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------2i8dA02 A:83-114                -------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh...hhhhhhhhhhhhhhhhhhh...eeeee..eeeeee..eeeeeeee...eeeeeehhhhhhhhhhhhhhhh..eeeeeeee.....hhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i8d A   2 GSLAEWYQRIPTPDDLTRVESLFANmQAQFPQLKLEFKWNQPmFTDHGTFImGFNPSKKHLAVAIEPQTmTRFIPQIDKAGYDHSQIIRFPWHKPLDEQLIHDLIAYTIDQKKDATTFWQR 122
                                    11        21     |  31        41  |     51 |      61        71        81        91       101       111       121 
                                                    27-MSE           44-MSE   53-MSE            71-MSE                                               


Chain B from PDB  Type:PROTEIN  Length:121
 aligned with Q035U5_LACP3 | Q035U5 from UniProtKB/TrEMBL  Length:122

    Alignment length:121
                                    11        21        31        41        51        61        71        81        91       101       111       121 
         Q035U5_LACP3     2 GSLAEWYQRIPTPDDLTRVESLFANMQAQFPQLKLEFKWNQPMFTDHGTFIMGFNPSKKHLAVAIEPQTMTRFIPQIDKAGYDHSQIIRFPWHKPLDEQLIHDLIAYTIDQKKDATTFWQR 122
               SCOP domains d2i8db_ B: Uncharacterized protein LSEI2283                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------2i8dB02 B:83-114                -------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhh..hhhhhhhhhhhhhhhhhhh...eeeee..eeeeee..eeeeeeee...eeeee.hhhhhhhhhhhhhhhh..eeeeeeee.....hhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 2i8d B   2 GSLAEWYQRIPTPDDLTRVESLFANmQAQFPQLKLEFKWNQPmFTDHGTFImGFNPSKKHLAVAIEPQTmTRFIPQIDKAGYDHSQIIRFPWHKPLDEQLIHDLIAYTIDQKKDATTFWQR 122
                                    11        21     |  31        41  |     51 |      61        71        81        91       101       111       121 
                                                    27-MSE           44-MSE   53-MSE            71-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2I8D)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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