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2I8D
Asym. Unit
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Asym.Unit (56 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN UNCHARACTERIZED CONSERVED PROTEIN OF COG5646 (ZP_00384875.1) FROM LACTOBACILLUS CASEI ATCC 334 AT 1.69 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
01 Sep 06 (Deposition) - 19 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Zp_00384875. 1, Uncharacterized Conserved Protein Of Cog5646, Structural Genomics, Psi-2, Protein Structure Initiative, Joint Center For Structural Genomics, Jcsg, Structural Genomics-Unknown Function Complex
(Keyword Search:
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of An Uncharacterized Conserved Protein O Cog5646 (Zp_00384875. 1) From Lactobacillus Casei Atcc 334 A 1. 69 A Resolution
To Be Published
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
4a: UNKNOWN LIGAND (UNLa)
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No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
GOL
3
Ligand/Ion
GLYCEROL
3
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
4
UNL
1
Ligand/Ion
UNKNOWN LIGAND
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE B:119 , TRP B:120 , ARG B:122
BINDING SITE FOR RESIDUE CL B 123
2
AC2
SOFTWARE
THR A:118 , PHE A:119 , TRP A:120 , ARG A:122
BINDING SITE FOR RESIDUE CL A 123
3
AC3
SOFTWARE
ARG B:73
BINDING SITE FOR RESIDUE CL B 124
4
AC4
SOFTWARE
ALA A:65 , ARG A:90 , HOH A:204 , HOH A:208 , ASP B:84 , HIS B:85 , SER B:86 , ARG B:122 , HOH B:132
BINDING SITE FOR RESIDUE UNL A 200
5
AC5
SOFTWARE
ASP A:84 , HIS A:85 , TRP A:120 , HOH A:203 , GOL B:126
BINDING SITE FOR RESIDUE GOL A 201
6
AC6
SOFTWARE
LYS B:39 , TRP B:40
BINDING SITE FOR RESIDUE GOL B 125
7
AC7
SOFTWARE
HIS A:85 , SER A:86 , TRP A:120 , GOL A:201 , GLN B:42 , ALA B:65 , ARG B:90 , HOH B:129 , HOH B:283
BINDING SITE FOR RESIDUE GOL B 126
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2i8da1 (A:2-122)
1b: SCOP_d2i8db_ (B:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Secretion chaperone-like
(60)
Superfamily
:
YdhG-like
(3)
Family
:
YdhG-like
(3)
Protein domain
:
Uncharacterized protein LSEI2283
(1)
Lactobacillus casei [TaxId: 1582]
(1)
1a
d2i8da1
A:2-122
1b
d2i8db_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2i8dA02 (A:83-114)
1b: CATH_2i8dB02 (B:83-114)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
Immunoglobulin FC, subunit C
(42)
Lactobacillus casei. Organism_taxid: 1582.
(1)
1a
2i8dA02
A:83-114
1b
2i8dB02
B:83-114
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Pfam Domains
(0, 0)
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