Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF TTHA0676 FROM THERMUS THERMOPHILUS HB8
 
Authors :  M. Sugahara, N. Kunishima, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  26 Jul 06  (Deposition) - 26 Jan 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,E,F  (1x)
Biol. Unit 2:  C,D,G,H  (1x)
Biol. Unit 3:  A,B,C,D,E,F,G,H  (1x)
Keywords :  Thiamin Biosynthesis, Thig, Thermus Thermophilus Hb8, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sugahara, N. Kunishima
Crystal Structure Of Ttha0676 From Thermus Thermophilus Hb8
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - THIAZOLE BIOSYNTHESIS PROTEIN THIG
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274
    Tissue: HB8
 
Molecule 2 - PUTATIVE THIAMINE BIOSYNTHESIS PROTEIN THIS
    Chains: E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274
    Tissue: HB8

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB  EF  
Biological Unit 2 (1x):   CD  GH
Biological Unit 3 (1x): ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2HTM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2HTM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2HTM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2HTM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2HTM)

(-) Exons   (0, 0)

(no "Exon" information available for 2HTM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
 aligned with THIG_THET8 | Q5SKG7 from UniProtKB/Swiss-Prot  Length:268

    Alignment length:241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
           THIG_THET8     1 MDTWKVGPVELKSRLILGSGKYEDFGVMREAIAAAKAEVVTVSVRRVELKAPGHVGLLEALEGVRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLEVIPDPTYLLPDPLETLKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGRKAYLAGPMRP 241
               SCOP domains d2htma_ A: automated matches                                                                                                                                                                                                                      SCOP domains
               CATH domains 2htmA00 A:1-241 Aldolase class I                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eee...eeee.....hhhhhhhhhhhh...eeeeeeee..-------hhhhhh...eeee......hhhhhhhhhhhhhhhhh..ee.............hhhhhhhhhhhhhhh..ee..ee..hhhhhhhhhhhh....ee............hhhhhhhhhhh.......eee....hhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2htm A   1 MDTWKVGPVELKSRLILGSGKYEDFGVMREAIAAAKAEVVTVSVRRVE-------GLLEALEGVRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLEVIPDPTYLLPDPLETLKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGRKAYLAGPMRP 241
                                    10        20        30        40       | -     |  60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
                                                                          48      56                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:233
 aligned with THIG_THET8 | Q5SKG7 from UniProtKB/Swiss-Prot  Length:268

    Alignment length:241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
           THIG_THET8     1 MDTWKVGPVELKSRLILGSGKYEDFGVMREAIAAAKAEVVTVSVRRVELKAPGHVGLLEALEGVRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLEVIPDPTYLLPDPLETLKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGRKAYLAGPMRP 241
               SCOP domains d2htmb_ B: automated matches                                                                                                                                                                                                                      SCOP domains
               CATH domains 2htmB00 B:1-241 Aldolase class I                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eee...eeee.....hhhhhhhhhhhh...eeeeeeee.--------hhhhhh...eeeee.....hhhhhhhhhhhhhhhhh..eeee...........hhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhh....ee............hhhhhhhhhhhhhhh...eee....hhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2htm B   1 MDTWKVGPVELKSRLILGSGKYEDFGVMREAIAAAKAEVVTVSVRRV--------GLLEALEGVRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLEVIPDPTYLLPDPLETLKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGRKAYLAGPMRP 241
                                    10        20        30        40      |  -     |  60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
                                                                         47       56                                                                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:241
 aligned with THIG_THET8 | Q5SKG7 from UniProtKB/Swiss-Prot  Length:268

    Alignment length:241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
           THIG_THET8     1 MDTWKVGPVELKSRLILGSGKYEDFGVMREAIAAAKAEVVTVSVRRVELKAPGHVGLLEALEGVRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLEVIPDPTYLLPDPLETLKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGRKAYLAGPMRP 241
               SCOP domains d2htmc_ C: automated matches                                                                                                                                                                                                                      SCOP domains
               CATH domains 2htmC00 C:1-241 Aldolase class I                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eee...eeee.....hhhhhhhhhhhhh..eeeeeeee......hhhhhhhhh...eeee......hhhhhhhhhhhhhhhhh..eeee...........hhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhh....ee............hhhhhhhhhhhhhhh...eee....hhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2htm C   1 MDTWKVGPVELKSRLILGSGKYEDFGVMREAIAAAKAEVVTVSVRRVELKAPGHVGLLEALEGVRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLEVIPDPTYLLPDPLETLKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGRKAYLAGPMRP 241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 


Chain D from PDB  Type:PROTEIN  Length:234
 aligned with THIG_THET8 | Q5SKG7 from UniProtKB/Swiss-Prot  Length:268

    Alignment length:241
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
           THIG_THET8     1 MDTWKVGPVELKSRLILGSGKYEDFGVMREAIAAAKAEVVTVSVRRVELKAPGHVGLLEALEGVRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLEVIPDPTYLLPDPLETLKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGRKAYLAGPMRP 241
               SCOP domains d2htmd_ D: automated matches                                                                                                                                                                                                                      SCOP domains
               CATH domains 2htmD00 D:1-241 Aldolase class I                                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eee...eee......hhhhhhhhhhhh...eeeeeeee..-------hhhhhh...eeeee.....hhhhhhhhhhhhhhhhh..eeee...........hhhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhh....ee............hhhhhhhhhhhhhhh...eee....hhhhhhhhhhh...eeeehhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2htm D   1 MDTWKVGPVELKSRLILGSGKYEDFGVMREAIAAAKAEVVTVSVRRVE-------GLLEALEGVRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLEVIPDPTYLLPDPLETLKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGRKAYLAGPMRP 241
                                    10        20        30        40       | -     |  60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240 
                                                                          48      56                                                                                                                                                                                         


Chain E from PDB  Type:PROTEIN  Length:64
 aligned with Q5SKG8_THET8 | Q5SKG8 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
         Q5SKG8_THET8     1 MVWLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG  64
               SCOP domains d2htme_ E: Uncharacterised protein TTHA0675                      SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.....hhhhhhhhhh.....eeeee..eeee.hhh.........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 2htm E   1 mVWLNGEPRPLEGKTLKEVLEEmGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALmQGG  64
                            |       10        20  |     30        40        50        60|   
                            |                    23-MSE                                61-MSE
                            1-MSE                                                           


Chain E from PDB  Type:PROTEIN  Length:64
 aligned with Q72KL7_THET2 | Q72KL7 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
         Q72KL7_THET2     1 MVWLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG  64
               SCOP domains d2htme_ E: Uncharacterised protein TTHA0675                      SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.....hhhhhhhhhh.....eeeee..eeee.hhh.........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 2htm E   1 mVWLNGEPRPLEGKTLKEVLEEmGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALmQGG  64
                            |       10        20  |     30        40        50        60|   
                            |                    23-MSE                                61-MSE
                            1-MSE                                                           


Chain F from PDB  Type:PROTEIN  Length:64
 aligned with Q5SKG8_THET8 | Q5SKG8 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
         Q5SKG8_THET8     1 MVWLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG  64
               SCOP domains d2htmf_ F: Uncharacterised protein TTHA0675                      SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.....hhhhhhhhhh......eeee..eeee.hhh.........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 2htm F   1 mVWLNGEPRPLEGKTLKEVLEEmGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALmQGG  64
                            |       10        20  |     30        40        50        60|   
                            |                    23-MSE                                61-MSE
                            1-MSE                                                           


Chain F from PDB  Type:PROTEIN  Length:64
 aligned with Q72KL7_THET2 | Q72KL7 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
         Q72KL7_THET2     1 MVWLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG  64
               SCOP domains d2htmf_ F: Uncharacterised protein TTHA0675                      SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.....hhhhhhhhhh......eeee..eeee.hhh.........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 2htm F   1 mVWLNGEPRPLEGKTLKEVLEEmGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALmQGG  64
                            |       10        20  |     30        40        50        60|   
                            |                    23-MSE                                61-MSE
                            1-MSE                                                           


Chain G from PDB  Type:PROTEIN  Length:64
 aligned with Q5SKG8_THET8 | Q5SKG8 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
         Q5SKG8_THET8     1 MVWLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG  64
               SCOP domains d2htmg_ G: Uncharacterised protein TTHA0675                      SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.....hhhhhhhhh.......eeee...eee.hhh.........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 2htm G   1 mVWLNGEPRPLEGKTLKEVLEEmGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALmQGG  64
                            |       10        20  |     30        40        50        60|   
                            |                    23-MSE                                61-MSE
                            1-MSE                                                           


Chain G from PDB  Type:PROTEIN  Length:64
 aligned with Q72KL7_THET2 | Q72KL7 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
         Q72KL7_THET2     1 MVWLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG  64
               SCOP domains d2htmg_ G: Uncharacterised protein TTHA0675                      SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.....hhhhhhhhh.......eeee...eee.hhh.........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 2htm G   1 mVWLNGEPRPLEGKTLKEVLEEmGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALmQGG  64
                            |       10        20  |     30        40        50        60|   
                            |                    23-MSE                                61-MSE
                            1-MSE                                                           


Chain H from PDB  Type:PROTEIN  Length:64
 aligned with Q5SKG8_THET8 | Q5SKG8 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
         Q5SKG8_THET8     1 MVWLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG  64
               SCOP domains d2htmh_ H: Uncharacterised protein TTHA0675                      SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.....hhhhhhhhhh......eeee..eeee.hhh.........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 2htm H   1 mVWLNGEPRPLEGKTLKEVLEEmGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALmQGG  64
                            |       10        20  |     30        40        50        60|   
                            |                    23-MSE                                61-MSE
                            1-MSE                                                           


Chain H from PDB  Type:PROTEIN  Length:64
 aligned with Q72KL7_THET2 | Q72KL7 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
         Q72KL7_THET2     1 MVWLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG  64
               SCOP domains d2htmh_ H: Uncharacterised protein TTHA0675                      SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.....hhhhhhhhhh......eeee..eeee.hhh.........eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 2htm H   1 mVWLNGEPRPLEGKTLKEVLEEmGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALmQGG  64
                            |       10        20  |     30        40        50        60|   
                            |                    23-MSE                                61-MSE
                            1-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2HTM)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (THIG_THET8 | Q5SKG7)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016783    sulfurtransferase activity    Catalysis of the transfer of sulfur atoms from one compound (donor) to another (acceptor).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009228    thiamine biosynthetic process    The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.
    GO:0009229    thiamine diphosphate biosynthetic process    The chemical reactions and pathways resulting in the formation of thiamine diphosphate, a derivative of thiamine (vitamin B1) which acts as a coenzyme in a range of processes including the Krebs cycle.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain E,F,G,H   (Q5SKG8_THET8 | Q5SKG8)

Chain E,F,G,H   (Q72KL7_THET2 | Q72KL7)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
(no "Sites" information available for 2htm)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2htm)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2htm
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q5SKG8_THET8 | Q5SKG8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  Q72KL7_THET2 | Q72KL7
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
  THIG_THET8 | Q5SKG7
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q5SKG8_THET8 | Q5SKG8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q72KL7_THET2 | Q72KL7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  THIG_THET8 | Q5SKG7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q72KL7_THET2 | Q72KL7: 2cu3
UniProtKB/TrEMBL
        Q5SKG8_THET8 | Q5SKG8: 2cu3

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2HTM)