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(-) Description

Title :  CRYSTAL STRUCTURE OF TT1568 FROM THERMUS THERMOPHILUS HB8
 
Authors :  M. Sugahara, S. Satoh, A. Ebihara, S. Kuramitsu, S. Yokoyama, N. Kunish Structural Genomics/Proteomics Initiative (Rsgi)
Date :  25 May 05  (Deposition) - 23 May 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Thermus Thermophilus Hb8, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Nppsfa, National Project On Protein Structural And Functional Analyses, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sugahara, S. Satoh, A. Ebihara, S. Kuramitsu, S. Yokoyama, N. Kunishima
Crystal Structure Of Tt1568 From Thermus Thermophilus Hb8
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNKNOWN FUNCTION PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1CD1Ligand/IonCADMIUM ION
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:7 , GLU B:7 , GLU B:43 , HOH B:84BINDING SITE FOR RESIDUE CD A 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2CU3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2CU3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2CU3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2CU3)

(-) Exons   (0, 0)

(no "Exon" information available for 2CU3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:63
 aligned with Q5SKG8_THET8 | Q5SKG8 from UniProtKB/TrEMBL  Length:64

    Alignment length:63
                                    10        20        30        40        50        60   
          Q5SKG8_THET8    1 MVWLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQG 63
               SCOP domains d2cu3a1 A:1-63 Uncharacterised protein TTHA0675                 SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.....hhhhhhhhhh.hhh.eeeee..eeee.hhh.........eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                  2cu3 A  1 mVWLNGEPRPLEGKTLKEVLEEmGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALmQG 63
                            |       10        20  |     30        40        50        60|  
                            |                    23-MSE                                61-MSE
                            1-MSE                                                          


Chain A from PDB  Type:PROTEIN  Length:63
 aligned with Q72KL7_THET2 | Q72KL7 from UniProtKB/TrEMBL  Length:64

    Alignment length:63
                                    10        20        30        40        50        60   
          Q72KL7_THET2    1 MVWLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQG 63
               SCOP domains d2cu3a1 A:1-63 Uncharacterised protein TTHA0675                 SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.....hhhhhhhhhh.hhh.eeeee..eeee.hhh.........eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                  2cu3 A  1 mVWLNGEPRPLEGKTLKEVLEEmGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALmQG 63
                            |       10        20  |     30        40        50        60|  
                            |                    23-MSE                                61-MSE
                            1-MSE                                                          


Chain B from PDB  Type:PROTEIN  Length:64
 aligned with Q5SKG8_THET8 | Q5SKG8 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
          Q5SKG8_THET8    1 MVWLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG 64
               SCOP domains d2cu3b_ B: Uncharacterised protein TTHA0675                      SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.....hhhhhhhhhh.hhh.eeeee..eeee.hhh.........eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  2cu3 B  1 mVWLNGEPRPLEGKTLKEVLEEmGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALmQGG 64
                            |       10        20  |     30        40        50        60|   
                            |                    23-MSE                                61-MSE
                            1-MSE                                                           


Chain B from PDB  Type:PROTEIN  Length:64
 aligned with Q72KL7_THET2 | Q72KL7 from UniProtKB/TrEMBL  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
          Q72KL7_THET2    1 MVWLNGEPRPLEGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALMQGG 64
               SCOP domains d2cu3b_ B: Uncharacterised protein TTHA0675                      SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eee.....hhhhhhhhhh.hhh.eeeee..eeee.hhh.........eeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  2cu3 B  1 mVWLNGEPRPLEGKTLKEVLEEmGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVALmQGG 64
                            |       10        20  |     30        40        50        60|   
                            |                    23-MSE                                61-MSE
                            1-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2CU3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2CU3)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2CU3)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
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(-) Related Entries Specified in the PDB File

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