2HOX - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   ALLIINASE FROM ALLIUM SATIVUM (GARLIC)

Authors :   L. J. W. Shimon, A. Rabinkov, M. Wilcheck, D. Mirelman, F. Frolow

Date :   17 Jul 06 (Deposition) - 06 Feb 07 (Release) - 16 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A,B,C,D  (1x)

Keywords :   Cysteine Sulphoxide Lyase, Alliinase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. J. Shimon, A. Rabinkov, I. Shin, T. Miron, D. Mirelman, M. Wilchek, F. Frolow
Two Structures Of Alliinase From Alliium Sativum L. : Apo Form And Ternary Complex With Aminoacrylate Reaction Intermediate Covalently Bound To The Plp Cofactor.
J. Mol. Biol. V. 366 611 2007
PubMed-ID: 17174334 | Reference-DOI: 10.1016/J.JMB.2006.11.041
(for further references see the PDB file header)

Molecule 1 - ALLIIN LYASE 1
	Chains	:	A, B, C, D
	EC Number	:	4.4.1.4
	Fragment	:	ALLIIN LYASE 1
	Organism Common	:	GARLIC
	Organism Scientific	:	ALLIUM SATIVUM
	Organism Taxid	:	4682
	Synonym	:	ALLIINASE 1, CYSTEINE SULPHOXIDE LYASE 1
	Tissue	:	BULBS

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 33)

No.	Name	Count	Type	Full Name
1	BMA	3	Ligand/Ion	BETA-D-MANNOSE
2	CL	4	Ligand/Ion	CHLORIDE ION
3	FUC	4	Ligand/Ion	ALPHA-L-FUCOSE
4	NAG	17	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	P1T	4	Ligand/Ion	2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID
6	XYP	1	Ligand/Ion	BETA-D-XYLOPYRANOSE

Biological Unit 1 (5, 16)

No.	Name	Count	Type	Full Name
1	BMA	2	Ligand/Ion	BETA-D-MANNOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
4	NAG	9	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	P1T	2	Ligand/Ion	2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID
6	XYP	1	Ligand/Ion	BETA-D-XYLOPYRANOSE

Biological Unit 2 (4, 13)

No.	Name	Count	Type	Full Name
1	BMA	1	Ligand/Ion	BETA-D-MANNOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
4	NAG	8	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	P1T	2	Ligand/Ion	2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID
6	XYP	-1	Ligand/Ion	BETA-D-XYLOPYRANOSE

Biological Unit 3 (5, 29)

No.	Name	Count	Type	Full Name
1	BMA	3	Ligand/Ion	BETA-D-MANNOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FUC	4	Ligand/Ion	ALPHA-L-FUCOSE
4	NAG	17	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	P1T	4	Ligand/Ion	2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID
6	XYP	1	Ligand/Ion	BETA-D-XYLOPYRANOSE

Asymmetric Unit (33, 33)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:146 , ALA A:149 , FUC A:501 , NAG A:502 , HOH A:6696 , HOH A:6723	BINDING SITE FOR RESIDUE NAG A 500
02	AC2	SOFTWARE	NAG A:500 , NAG A:502 , HOH A:6280 , HOH A:6416 , HOH A:6450 , HOH A:6715	BINDING SITE FOR RESIDUE FUC A 501
03	AC3	SOFTWARE	NAG A:500 , FUC A:501 , BMA A:503 , XYP A:504 , HOH A:6362 , HOH A:6386 , HOH A:6484 , ASP C:123	BINDING SITE FOR RESIDUE NAG A 502
04	AC4	SOFTWARE	NAG A:502 , XYP A:504 , BMA A:505 , HOH A:6119 , HOH A:6228 , HOH A:6332 , HOH A:6336 , HOH A:6684	BINDING SITE FOR RESIDUE BMA A 503
05	AC5	SOFTWARE	NAG A:502 , BMA A:503 , BMA A:505 , HOH A:6228 , HOH A:6665 , ASP C:123 , ARG C:124 , TYR C:125 , LYS C:266 , HOH C:6384	BINDING SITE FOR RESIDUE XYP A 504
06	AC6	SOFTWARE	BMA A:503 , XYP A:504 , HOH A:6215 , HOH A:6294 , HOH A:6466 , HOH A:6672 , HOH A:6697 , HOH A:6710 , HOH A:6718 , HOH A:6725 , LYS C:266	BINDING SITE FOR RESIDUE BMA A 505
07	AC7	SOFTWARE	ASN A:328 , GLN A:408 , PHE A:411 , NAG A:507 , HOH A:6235 , HOH A:6308	BINDING SITE FOR RESIDUE NAG A 506
08	AC8	SOFTWARE	NAG A:506 , HOH A:6404	BINDING SITE FOR RESIDUE NAG A 507
09	AC9	SOFTWARE	ASN B:146 , THR B:148 , ALA B:149 , FUC B:501 , HOH B:6006 , HOH B:6613	BINDING SITE FOR RESIDUE NAG B 500
10	BC1	SOFTWARE	NAG B:500 , HOH B:6277	BINDING SITE FOR RESIDUE FUC B 501
11	BC2	SOFTWARE	GLU B:324 , ASN B:328 , GLN B:408 , NAG B:503 , HOH B:6179 , HOH B:6272 , HOH B:6650	BINDING SITE FOR RESIDUE NAG B 502
12	BC3	SOFTWARE	NAG B:502 , HOH B:6455 , HOH B:6488 , HOH B:6663	BINDING SITE FOR RESIDUE NAG B 503
13	BC4	SOFTWARE	ASN A:17 , ASN B:191 , HOH B:6270 , HOH B:6279 , HOH B:6296 , HOH B:6309	BINDING SITE FOR RESIDUE NAG B 3500
14	BC5	SOFTWARE	ASN A:191 , HOH A:6248 , HOH A:6269 , HOH A:6301 , HOH A:6704 , HOH A:6728	BINDING SITE FOR RESIDUE NAG A 4500
15	BC6	SOFTWARE	ASN C:146 , FUC C:501 , NAG C:502 , HOH C:6272 , TYR D:174	BINDING SITE FOR RESIDUE NAG C 500
16	BC7	SOFTWARE	ASN C:276 , LYS C:280 , NAG C:500 , NAG C:502 , HOH C:6694 , GLU D:170	BINDING SITE FOR RESIDUE FUC C 501
17	BC8	SOFTWARE	NAG C:500 , FUC C:501 , BMA C:503 , LYS D:173	BINDING SITE FOR RESIDUE NAG C 502
18	BC9	SOFTWARE	HOH A:6573 , NAG C:502	BINDING SITE FOR RESIDUE BMA C 503
19	CC1	SOFTWARE	ASN C:328 , GLN C:408 , PHE C:411 , NAG C:505 , HOH C:6328 , HOH C:6343 , HOH C:6457 , HOH C:6515 , HOH C:6739	BINDING SITE FOR RESIDUE NAG C 504
20	CC2	SOFTWARE	NAG C:504 , HOH C:6370 , HOH C:6676 , ASP D:152	BINDING SITE FOR RESIDUE NAG C 505
21	CC3	SOFTWARE	ASN D:146 , THR D:148 , ALA D:149 , FUC D:501 , NAG D:502 , HOH D:6154 , HOH D:6213	BINDING SITE FOR RESIDUE NAG D 500
22	CC4	SOFTWARE	NAG D:500 , NAG D:502 , HOH D:6209 , HOH D:6415 , HOH D:6432	BINDING SITE FOR RESIDUE FUC D 501
23	CC5	SOFTWARE	NAG D:500 , FUC D:501 , HOH D:6204 , HOH D:6400	BINDING SITE FOR RESIDUE NAG D 502
24	CC6	SOFTWARE	ASN D:328 , GLN D:408 , PHE D:411 , NAG D:504 , HOH D:6259 , HOH D:6304	BINDING SITE FOR RESIDUE NAG D 503
25	CC7	SOFTWARE	NAG D:503 , HOH D:6238 , HOH D:6382	BINDING SITE FOR RESIDUE NAG D 504
26	CC8	SOFTWARE	PHE A:93 , PHE A:94 , SER A:98 , ASN A:99 , PHE A:100	BINDING SITE FOR RESIDUE CL A 5001
27	CC9	SOFTWARE	PHE B:93 , PHE B:94 , SER B:98 , ASN B:99 , PHE B:100	BINDING SITE FOR RESIDUE CL B 5002
28	DC1	SOFTWARE	PHE C:93 , PHE C:94 , SER C:98 , ASN C:99 , PHE C:100	BINDING SITE FOR RESIDUE CL C 5003
29	DC2	SOFTWARE	PHE D:93 , PHE D:94 , SER D:98 , ASN D:99 , PHE D:100	BINDING SITE FOR RESIDUE CL D 5004
30	DC3	SOFTWARE	GLY A:64 , GLY A:131 , VAL A:132 , THR A:133 , TYR A:165 , THR A:203 , ASN A:207 , ASP A:225 , VAL A:227 , TYR A:228 , THR A:248 , SER A:250 , LYS A:251 , ARG A:259 , TYR A:363 , ARG A:401 , HOH A:6130 , HOH A:6641 , TYR B:92	BINDING SITE FOR RESIDUE P1T A 6001
31	DC4	SOFTWARE	TYR A:92 , GLY B:64 , GLY B:131 , VAL B:132 , THR B:133 , TYR B:165 , THR B:203 , ASN B:207 , ASP B:225 , VAL B:227 , TYR B:228 , THR B:248 , SER B:250 , LYS B:251 , ARG B:259 , TYR B:363 , ARG B:401 , HOH B:6166 , HOH B:6428	BINDING SITE FOR RESIDUE P1T B 6002
32	DC5	SOFTWARE	GLY C:64 , GLY C:131 , VAL C:132 , THR C:133 , TYR C:165 , THR C:203 , ASN C:207 , ASP C:225 , VAL C:227 , TYR C:228 , THR C:248 , SER C:250 , LYS C:251 , ARG C:259 , TYR C:363 , ARG C:401 , HOH C:6017 , HOH C:6211 , TYR D:92	BINDING SITE FOR RESIDUE P1T C 6003
33	DC6	SOFTWARE	TYR C:92 , GLY D:64 , GLY D:131 , VAL D:132 , THR D:133 , TYR D:165 , THR D:203 , ASN D:207 , ASP D:225 , VAL D:227 , TYR D:228 , THR D:248 , SER D:250 , LYS D:251 , ARG D:259 , TYR D:363 , ARG D:401 , HOH D:6118 , HOH D:6265 , HOH D:6412	BINDING SITE FOR RESIDUE P1T D 6004

Asymmetric Unit

No.	Residues
1	A:39	-	A:20
2	A:50	-	A:41
3	A:57	-	A:44
4	A:376	-	A:368
5	B:39	-	B:20
6	B:50	-	B:41
7	B:57	-	B:44
8	B:376	-	B:368
9	C:39	-	C:20
10	C:50	-	C:41
11	C:57	-	C:44
12	C:376	-	C:368
13	D:39	-	D:20
14	D:50	-	D:41
15	D:57	-	D:44
16	D:376	-	D:368

Asymmetric Unit

No.	Residues
1	Asn A:95	-	Pro A:96
2	Ala A:162	-	Pro A:163
3	Ser A:204	-	Pro A:205
4	Asn A:207	-	Pro A:208
5	Asn B:95	-	Pro B:96
6	Ala B:162	-	Pro B:163
7	Ser B:204	-	Pro B:205
8	Asn B:207	-	Pro B:208
9	Asn C:95	-	Pro C:96
10	Ala C:162	-	Pro C:163
11	Ser C:204	-	Pro C:205
12	Asn C:207	-	Pro C:208
13	Asn D:95	-	Pro D:96
14	Ala D:162	-	Pro D:163
15	Ser D:204	-	Pro D:205
16	Asn D:207	-	Pro D:208

(no "SAP(SNP)/Variant" information available for 2HOX)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EGF_1	PS00022	EGF-like domain signature 1.	ALLN1_ALLSA	77-88	4	A:39-50 B:39-50 C:39-50 D:39-50

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EGF_1	PS00022	EGF-like domain signature 1.	ALLN1_ALLSA	77-88	2	A:39-50 B:39-50 - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EGF_1	PS00022	EGF-like domain signature 1.	ALLN1_ALLSA	77-88	2	- - C:39-50 D:39-50

Biological Unit 3 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EGF_1	PS00022	EGF-like domain signature 1.	ALLN1_ALLSA	77-88	4	A:39-50 B:39-50 C:39-50 D:39-50

(no "Exon" information available for 2HOX)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:425
 aligned with ALLN1_ALLSA | Q01594 from UniProtKB/Swiss-Prot  Length:486

    Alignment length:425
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458     
          ALLN1_ALLSA    39 KMTWTMKAAEEAEAVANINCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFNKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKAK 463
               SCOP domains d2hoxa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 2hoxA01 A:1-100 Alliin lyase; domain 1                                                              2hoxA02 A:101-310 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                             2hoxA03 A:311-423 Aspartate Aminotransferase, domain 1                                                           -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh..hhh.ee......ee..ee..ee...ee.....ee.....ee.....hhhhhhhhh.hhhhhheee.................hhhhhhhhhhhhhhhh.......eeeeehhhhhhhhhhhhhhh...........eeeee....hhhhhhhhhhh....eeeeee.hhhh...hhh.eeeeee.................eeeee..................eeeeehhhhh.hhhhh.eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh....ee.......eee....eee.....eeeeee.hhhhhhhhhhhhhh.ee.ee.hhhh....eeeee...hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------EGF_1       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hox A   1 KMTWTMKAAEEAEAVANINCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKAK 425
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420

Chain B from PDB  Type:PROTEIN  Length:427
 aligned with ALLN1_ALLSA | Q01594 from UniProtKB/Swiss-Prot  Length:486

    Alignment length:427
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       
          ALLN1_ALLSA    39 KMTWTMKAAEEAEAVANINCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFNKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKAKRK 465
               SCOP domains d2hoxb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 2hoxB01 B:1-100 Alliin lyase; domain 1                                                              2hoxB02 B:101-310 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                             2hoxB03 B:311-423 Aspartate Aminotransferase, domain 1                                                           ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh......ee......ee..ee..ee...ee.....ee.....ee.....hhhhhhhhh.hhhhhheee.................hhhhhhhhhhhhhhhh.......eeeeehhhhhhhhhhhhhhh...........eeeee....hhhhhhhhhhh....eeeeee.hhhh...hhh.eeeeee.................eeeee..................eeeeehhhhh.hhhhh.eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh....eee......eee....eee.....eeeeee.hhhhhhhhhhhhhh.ee.ee.hhhh....eeeee...hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------EGF_1       ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hox B   1 KMTWTMKAAEEAEAVANINCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKAKRK 427
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420

Chain C from PDB  Type:PROTEIN  Length:425
 aligned with ALLN1_ALLSA | Q01594 from UniProtKB/Swiss-Prot  Length:486

    Alignment length:425
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458     
          ALLN1_ALLSA    39 KMTWTMKAAEEAEAVANINCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFNKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKAK 463
               SCOP domains d2hoxc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 2hoxC01 C:1-100 Alliin lyase; domain 1                                                              2hoxC02 C:101-310 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                             2hoxC03 C:311-423 Aspartate Aminotransferase, domain 1                                                           -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh......ee......ee..ee..ee...ee.....ee.....ee.....hhhhhhhhh.hhhhhheee.................hhhhhhhhhhhhhhhh.......eeeeehhhhhhhhhhhhhhh...........eeeee....hhhhhhhhhhh....eeeeee.hhhh...hhh.eeeeee.................eeeee..................eeeeehhhhh.hhhhh.eeeee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh....eee......eee....eee.....eeeeee.hhhhhhhhhhhhhh.ee.ee.hhhh....eeeee...hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------EGF_1       --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hox C   1 KMTWTMKAAEEAEAVANINCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKAK 425
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420

Chain D from PDB  Type:PROTEIN  Length:427
 aligned with ALLN1_ALLSA | Q01594 from UniProtKB/Swiss-Prot  Length:486

    Alignment length:427
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       
          ALLN1_ALLSA    39 KMTWTMKAAEEAEAVANINCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFNKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKAKRK 465
               SCOP domains d2hoxd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 2hoxD01 D:1-100 Alliin lyase; domain 1                                                              2hoxD02 D:101-310 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                             2hoxD03 D:311-423 Aspartate Aminotransferase, domain 1                                                           ---- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh......ee......ee..ee..ee...ee.....ee.....ee.....hhhhhhhhhhhhhhhheee.................hhhhhhhhhhhhhhhh.......eeeeehhhhhhhhhhhhhhh...........eeeee....hhhhhhhhhhh....eeeeee.hhhh...hhh.eeeeee.................eeeee..................eeeeehhhhh.hhhhh.eeeee.hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh....eee......eee....eee.....eeeeee.hhhhhhhhhhhhhh.ee.ee.hhhh....eeeee...hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------EGF_1       ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2hox D   1 KMTWTMKAAEEAEAVANINCSEHGRAFLDGIISEGSPKCECNTCYTGPDCSEKIQGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAANYVNVSNPEQYIEMVTSPNNPEGLLRHAVIKGCKSIYDMVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDDFDQLMYYLKDMVKAKRK 427
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: PLP-dependent transferase-like (627)

Superfamily: PLP-dependent transferases (625)

Family: AAT-like (184)

Protein domain: automated matches (16)

Garlic (Allium sativum) [TaxId: 4682] (2)

1a	d2hoxa_	A:
1b	d2hoxb_	B:
1c	d2hoxc_	C:
1d	d2hoxd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Aspartate Aminotransferase; domain 2 (384)

Homologous Superfamily: Type I PLP-dependent aspartate aminotransferase-like (Major domain) (384)

Garlic (Allium sativum) (3)

1a	2hoxA02	A:101-310
1b	2hoxB02	B:101-310
1c	2hoxC02	C:101-310
1d	2hoxD02	D:101-310

Architecture: Alpha-Beta Complex (3881)

Topology: Aspartate Aminotransferase, domain 1 (355)

Homologous Superfamily: Aspartate Aminotransferase, domain 1 (354)

Garlic (Allium sativum) (3)

2a	2hoxA03	A:311-423
2b	2hoxB03	B:311-423
2c	2hoxC03	C:311-423
2d	2hoxD03	D:311-423

Class: Mainly Beta (13760)

Architecture: Ribbon (789)

Topology: Laminin (270)

Homologous Superfamily: Alliin lyase; domain 1 (3)

Garlic (Allium sativum) (3)

3a	2hoxA01	A:1-100
3b	2hoxB01	B:1-100
3c	2hoxC01	C:1-100
3d	2hoxD01	D:1-100

(no "Pfam Domain" information available for 2HOX)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (ALLN1_ALLSA | Q01594)

molecular function
	GO:0047654	alliin lyase activity	Catalysis of the reaction: an S-alkyl-L-cysteine S-oxide = an alkyl sulfenate + 2-aminoacrylate.
	GO:0016846	carbon-sulfur lyase activity	Catalysis of the elimination of hydrogen sulfide or substituted H2S.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
cellular component
	GO:0005773	vacuole	A closed structure, found only in eukaryotic cells, that is completely surrounded by unit membrane and contains liquid material. Cells contain one or several vacuoles, that may have different functions from each other. Vacuoles have a diverse array of functions. They can act as a storage organelle for nutrients or waste products, as a degradative compartment, as a cost-effective way of increasing cell size, and as a homeostatic regulator controlling both turgor pressure and pH of the cytosol.

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	Cis Peptide Bonds
		Ala A:162 - Pro A:163	[ RasMol ]
		Ala B:162 - Pro B:163	[ RasMol ]
		Ala C:162 - Pro C:163	[ RasMol ]
		Ala D:162 - Pro D:163	[ RasMol ]
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		Ser C:204 - Pro C:205	[ RasMol ]
		Ser D:204 - Pro D:205	[ RasMol ]

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	2hox
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	ALLN1_ALLSA \| Q01594	:	1lk9 2hor

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 33)

Sites (33, 33)

SS Bonds (16, 16)

Cis Peptide Bonds (16, 16)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

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SCOP Domains (1, 4)

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