2H57 - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN ADP-RIBOSYLATION FACTOR-LIKE 6

Authors :   J. Wang, Y. Shen, W. Tempel, R. Landry, J. Lew, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium (Sgc)

Date :   25 May 06 (Deposition) - 25 Jul 06 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Gtp, Gtpase, Membrane Trafficking, Structural Genomics Consortium, Sgc, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Wang, Y. Shen, W. Tempel, R. Landry, J. Lew, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park
Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 (Casp Target)
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 6
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	P28A-LIC
	Expression System Strain	:	BL21-CODONPLUS (DE-3)-RIL
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ARL6
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	BARDET-BIEDL SYNDROME 3 PROTEIN

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 15)

No.	Name	Count	Type	Full Name
1	GTP	3	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
2	MG	3	Ligand/Ion	MAGNESIUM ION
3	UNX	9	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	GTP	1	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	UNX	4	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	GTP	1	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	UNX	3	Ligand/Ion	UNKNOWN ATOM OR ION

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	GTP	1	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	UNX	2	Ligand/Ion	UNKNOWN ATOM OR ION

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:31 , THR A:50 , GTP A:201 , HOH A:401 , HOH A:402	BINDING SITE FOR RESIDUE MG A 202
02	AC2	SOFTWARE	THR B:31 , THR B:50 , GTP B:201 , HOH B:406 , HOH B:407	BINDING SITE FOR RESIDUE MG B 202
03	AC3	SOFTWARE	THR C:31 , THR C:50 , GTP C:201 , HOH C:410 , HOH C:411	BINDING SITE FOR RESIDUE MG C 202
04	AC4	SOFTWARE	LEU A:25 , ASP A:26 , ASN A:27 , SER A:28 , GLY A:29 , LYS A:30 , THR A:31 , THR A:32 , ILE A:47 , THR A:50 , SER A:71 , GLY A:72 , ASN A:130 , LYS A:131 , ASP A:133 , LEU A:134 , ASP A:163 , ALA A:164 , ILE A:165 , MG A:202 , HOH A:308 , HOH A:325 , HOH A:340 , HOH A:401 , HOH A:402 , HOH A:403 , ARG C:75	BINDING SITE FOR RESIDUE GTP A 201
05	AC5	SOFTWARE	ASP B:26 , ASN B:27 , SER B:28 , GLY B:29 , LYS B:30 , THR B:31 , THR B:32 , ILE B:47 , THR B:50 , SER B:71 , GLY B:72 , ASN B:130 , LYS B:131 , ASP B:133 , LEU B:134 , ASP B:163 , ALA B:164 , ILE B:165 , MG B:202 , HOH B:322 , HOH B:406 , HOH B:407 , HOH B:408 , HOH B:427 , HOH B:430	BINDING SITE FOR RESIDUE GTP B 201
06	AC6	SOFTWARE	ASP C:26 , ASN C:27 , SER C:28 , GLY C:29 , LYS C:30 , THR C:31 , THR C:32 , ILE C:47 , THR C:50 , GLY C:72 , ASN C:130 , LYS C:131 , ASP C:133 , LEU C:134 , ASP C:163 , ALA C:164 , ILE C:165 , MG C:202 , HOH C:312 , HOH C:314 , HOH C:319 , HOH C:358 , HOH C:410 , HOH C:411 , HOH C:412	BINDING SITE FOR RESIDUE GTP C 201
07	AC7	SOFTWARE	ARG A:101 , ARG C:101	BINDING SITE FOR RESIDUE UNX C 501
08	AC8	SOFTWARE	GLY B:74 , ARG B:75	BINDING SITE FOR RESIDUE UNX B 502
09	AC9	SOFTWARE	GLN A:45	BINDING SITE FOR RESIDUE UNX A 503
10	BC1	SOFTWARE	LYS A:142 , ARG B:99	BINDING SITE FOR RESIDUE UNX A 504
11	BC2	SOFTWARE	GLU A:168 , HOH A:341 , SER B:140 , VAL B:141	BINDING SITE FOR RESIDUE UNX B 506
12	BC3	SOFTWARE	ARG A:77 , ASN A:78 , TRP A:80 , GLU A:81	BINDING SITE FOR RESIDUE UNX A 508
13	BC4	SOFTWARE	LEU C:134 , ARG C:135	BINDING SITE FOR RESIDUE UNX C 509

(no "SS Bond" information available for 2H57)

(no "Cis Peptide Bond" information available for 2H57)

Asymmetric Unit (6, 18)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_027643	T	31	M	ARL6_HUMAN	Disease (BBS3)	104893680	A/B/C	T	31	M
2	UniProt	VAR_027644	T	31	R	ARL6_HUMAN	Disease (BBS3)	104893680	A/B/C	T	31	R
3	UniProt	VAR_064184	A	89	V	ARL6_HUMAN	Disease (RP55)	587777805	A/B/C	A	89	V
4	UniProt	VAR_071405	I	94	T	ARL6_HUMAN	Disease (BBS3)	771054395	A/B/C	I	94	T
5	UniProt	VAR_027645	G	169	A	ARL6_HUMAN	Disease (BBS3)	104893679	A/B/C	G	169	A
6	UniProt	VAR_027646	L	170	W	ARL6_HUMAN	Disease (BBS3)	104893681	A/B/C	L	170	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (6, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_027643	T	31	M	ARL6_HUMAN	Disease (BBS3)	104893680	A	T	31	M
2	UniProt	VAR_027644	T	31	R	ARL6_HUMAN	Disease (BBS3)	104893680	A	T	31	R
3	UniProt	VAR_064184	A	89	V	ARL6_HUMAN	Disease (RP55)	587777805	A	A	89	V
4	UniProt	VAR_071405	I	94	T	ARL6_HUMAN	Disease (BBS3)	771054395	A	I	94	T
5	UniProt	VAR_027645	G	169	A	ARL6_HUMAN	Disease (BBS3)	104893679	A	G	169	A
6	UniProt	VAR_027646	L	170	W	ARL6_HUMAN	Disease (BBS3)	104893681	A	L	170	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (6, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_027643	T	31	M	ARL6_HUMAN	Disease (BBS3)	104893680	B	T	31	M
2	UniProt	VAR_027644	T	31	R	ARL6_HUMAN	Disease (BBS3)	104893680	B	T	31	R
3	UniProt	VAR_064184	A	89	V	ARL6_HUMAN	Disease (RP55)	587777805	B	A	89	V
4	UniProt	VAR_071405	I	94	T	ARL6_HUMAN	Disease (BBS3)	771054395	B	I	94	T
5	UniProt	VAR_027645	G	169	A	ARL6_HUMAN	Disease (BBS3)	104893679	B	G	169	A
6	UniProt	VAR_027646	L	170	W	ARL6_HUMAN	Disease (BBS3)	104893681	B	L	170	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (6, 6)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_027643	T	31	M	ARL6_HUMAN	Disease (BBS3)	104893680	C	T	31	M
2	UniProt	VAR_027644	T	31	R	ARL6_HUMAN	Disease (BBS3)	104893680	C	T	31	R
3	UniProt	VAR_064184	A	89	V	ARL6_HUMAN	Disease (RP55)	587777805	C	A	89	V
4	UniProt	VAR_071405	I	94	T	ARL6_HUMAN	Disease (BBS3)	771054395	C	I	94	T
5	UniProt	VAR_027645	G	169	A	ARL6_HUMAN	Disease (BBS3)	104893679	C	G	169	A
6	UniProt	VAR_027646	L	170	W	ARL6_HUMAN	Disease (BBS3)	104893681	C	L	170	W

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2H57)

Asymmetric Unit (7, 21)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1d	ENST00000394206	1d	ENSE00001332488	chr3:97483595-97483821	227	ARL6_HUMAN	-	0	0	-	-
1.3	ENST00000394206	3	ENSE00001517743	chr3:97485476-97485534	59	ARL6_HUMAN	-	0	0	-	-
1.4	ENST00000394206	4	ENSE00002146031	chr3:97486925-97487074	150	ARL6_HUMAN	1-41	41	3	A:17-41 B:16-41 C:17-41	25 26 25
1.5	ENST00000394206	5	ENSE00000774463	chr3:97499003-97499064	62	ARL6_HUMAN	42-62	21	3	A:42-62 B:42-62 C:42-62	21 21 21
1.6	ENST00000394206	6	ENSE00000817853	chr3:97499459-97499527	69	ARL6_HUMAN	62-85	24	3	A:62-85 B:62-85 C:62-85	24 24 24
1.7a	ENST00000394206	7a	ENSE00000817854	chr3:97503799-97503893	95	ARL6_HUMAN	85-117	33	3	A:85-117 B:85-117 C:85-117	33 33 33
1.8b	ENST00000394206	8b	ENSE00000774461	chr3:97506834-97506963	130	ARL6_HUMAN	117-160	44	3	A:117-160 B:117-160 C:117-160	44 44 44
1.10	ENST00000394206	10	ENSE00000817855	chr3:97510615-97510670	56	ARL6_HUMAN	160-179	20	3	A:160-179 B:160-179 C:160-179	20 20 20
1.12b	ENST00000394206	12b	ENSE00001001055	chr3:97516868-97517369	502	ARL6_HUMAN	179-186	8	3	A:179-181 B:179-182 C:179-182	3 4 4

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:165
 aligned with ARL6_HUMAN | Q9H0F7 from UniProtKB/Swiss-Prot  Length:186

    Alignment length:165
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176     
           ARL6_HUMAN    17 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181
               SCOP domains d2h57a_ A: automated matches                                                                                                                                          SCOP domains
               CATH domains 2h57A00 A:17-181 P-loop containing nucleotide triphosphate hydrolases                                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhhhh.........eeeeeee....eeeeeee.....hhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhhh.........eeeeee........hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) --------------M---------------------------------------------------------V----T--------------------------------------------------------------------------AW----------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------R------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: A:17-41   Exon 1.5  PDB: A:42-6----------------------Exon 1.7a  PDB: A:85-117         ------------------------------------------Exon 1.10           -- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------Exon 1.6  PDB: A:62-85  -------------------------------Exon 1.8b  PDB: A:117-160 UniProt: 117-160  ------------------1.1 Transcript 1 (2)
                 2h57 A  17 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 181
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176

Chain B from PDB  Type:PROTEIN  Length:167
 aligned with ARL6_HUMAN | Q9H0F7 from UniProtKB/Swiss-Prot  Length:186

    Alignment length:167
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       
           ARL6_HUMAN    16 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 182
               SCOP domains d2h57b_ B: automated matches                                                                                                                                            SCOP domains
               CATH domains 2h57B00 B:16-182 P-loop containing nucleotide triphosphate hydrolases                                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhh...............eeeeeee....eeeeeee..hhhhhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhhh.........eeeeee........hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ---------------M---------------------------------------------------------V----T--------------------------------------------------------------------------AW------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------R------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: B:16-41    Exon 1.5  PDB: B:42-6----------------------Exon 1.7a  PDB: B:85-117         ------------------------------------------Exon 1.10           --- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------Exon 1.6  PDB: B:62-85  -------------------------------Exon 1.8b  PDB: B:117-160 UniProt: 117-160  ------------------1.12 Transcript 1 (2)
                 2h57 B  16 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 182
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175

Chain C from PDB  Type:PROTEIN  Length:166
 aligned with ARL6_HUMAN | Q9H0F7 from UniProtKB/Swiss-Prot  Length:186

    Alignment length:166
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176      
           ARL6_HUMAN    17 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 182
               SCOP domains d2h57c_ C: automated matches                                                                                                                                           SCOP domains
               CATH domains 2h57C00 C:17-182 P-loop containing nucleotide triphosphate hydrolases                                                                                                  CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....hhhhhhhhhhhhhhh.........eeeeeee....eeeeeee..hhhhhhhhhhhh....eeeeeee....hhhhhhhhhhhhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) --------------M---------------------------------------------------------V----T--------------------------------------------------------------------------AW------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------R------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.4  PDB: C:17-41   Exon 1.5  PDB: C:42-6----------------------Exon 1.7a  PDB: C:85-117         ------------------------------------------Exon 1.10           --- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------Exon 1.6  PDB: C:62-85  -------------------------------Exon 1.8b  PDB: C:117-160 UniProt: 117-160  ------------------1.12 Transcript 1 (2)
                 2h57 C  17 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 182
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: automated matches (303)

Protein domain: automated matches (303)

Human (Homo sapiens) [TaxId: 9606] (86)

1a	d2h57a_	A:
1b	d2h57b_	B:
1c	d2h57c_	C:

Asymmetric Unit

Classes(

)

Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)

Human (Homo sapiens) (413)

1a	2h57B00	B:16-182
1b	2h57C00	C:17-182
1c	2h57A00	A:17-181

(no "Pfam Domain" information available for 2H57)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (ARL6_HUMAN | Q9H0F7)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005543	phospholipid binding	Interacting selectively and non-covalently with phospholipids, a class of lipids containing phosphoric acid as a mono- or diester.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0016055	Wnt signaling pathway	The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
	GO:0007420	brain development	The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
	GO:0030030	cell projection organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a prolongation or process extending from a cell, e.g. a flagellum or axon.
	GO:0007368	determination of left/right symmetry	The establishment of an organism's body plan or part of an organism with respect to the left and right halves. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry.
	GO:0045444	fat cell differentiation	The process in which a relatively unspecialized cell acquires specialized features of an adipocyte, an animal connective tissue cell specialized for the synthesis and storage of fat.
	GO:0032402	melanosome transport	The directed movement of melanosomes into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0046909	obsolete intermembrane transport	OBSOLETE. The directed movement of substances between any membrane of a cell, including the plasma membrane and its regions.
	GO:0061512	protein localization to cilium	A process in which a protein is transported to, or maintained in, a location within a cilium.
	GO:0097499	protein localization to non-motile cilium	A process in which a protein is transported to, or maintained in, a location within a non-motile cilium.
	GO:0051258	protein polymerization	The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
	GO:0006612	protein targeting to membrane	The process of directing proteins towards a membrane, usually using signals contained within the protein.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0008589	regulation of smoothened signaling pathway	Any process that modulates the frequency, rate or extent of smoothened signaling.
	GO:0050896	response to stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
	GO:0010842	retina layer formation	The process in which the vertebrate retina is organized into three laminae: the outer nuclear layer (ONL), which contains photoreceptor nuclei; the inner nuclear layer (INL), which contains amacrine, bipolar and horizontal cells; and the retinal ganglion cell (RGC) layer. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells. The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells. Spanning all layers of the retina are the radially oriented Mueller glia.
	GO:0007264	small GTPase mediated signal transduction	Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
	GO:0007601	visual perception	The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
cellular component
	GO:0034464	BBSome	A ciliary protein complex involved in cilium biogenesis. It consists of at least seven Bardet-Biedl syndrome (BBS) proteins and BBIP10. It moves in association with IFT trains through cilia (likely as an IFT-A/B adaptor or cargo), and is required for the integrity of IFT-A and IFT-B.
	GO:0005879	axonemal microtubule	A microtubule in the axoneme of a eukaryotic cilium or flagellum; an axoneme contains nine modified doublet microtubules, which may or may not surround a pair of single microtubules.
	GO:0005930	axoneme	The bundle of microtubules and associated proteins that forms the core of cilia (also called flagella) in eukaryotic cells and is responsible for their movements.
	GO:0042995	cell projection	A prolongation or process extending from a cell, e.g. a flagellum or axon.
	GO:0060170	ciliary membrane	The portion of the plasma membrane surrounding a cilium.
	GO:0005929	cilium	A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030117	membrane coat	Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	2h57
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Description

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