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2H57
Biol. Unit 1
Info
Asym.Unit (92 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (31 KB)
Biol.Unit 3 (30 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ADP-RIBOSYLATION FACTOR-LIKE 6
Authors
:
J. Wang, Y. Shen, W. Tempel, R. Landry, J. Lew, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium (Sgc)
Date
:
25 May 06 (Deposition) - 25 Jul 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Gtp, Gtpase, Membrane Trafficking, Structural Genomics Consortium, Sgc, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Wang, Y. Shen, W. Tempel, R. Landry, J. Lew, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park
Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 (Casp Target)
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
1b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
1c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: UNKNOWN ATOM OR ION (UNXa)
3b: UNKNOWN ATOM OR ION (UNXb)
3c: UNKNOWN ATOM OR ION (UNXc)
3d: UNKNOWN ATOM OR ION (UNXd)
3e: UNKNOWN ATOM OR ION (UNXe)
3f: UNKNOWN ATOM OR ION (UNXf)
3g: UNKNOWN ATOM OR ION (UNXg)
3h: UNKNOWN ATOM OR ION (UNXh)
3i: UNKNOWN ATOM OR ION (UNXi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GTP
1
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
UNX
4
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
6: BC2 (SOFTWARE)
7: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:31 , THR A:50 , GTP A:201 , HOH A:401 , HOH A:402
BINDING SITE FOR RESIDUE MG A 202
2
AC4
SOFTWARE
LEU A:25 , ASP A:26 , ASN A:27 , SER A:28 , GLY A:29 , LYS A:30 , THR A:31 , THR A:32 , ILE A:47 , THR A:50 , SER A:71 , GLY A:72 , ASN A:130 , LYS A:131 , ASP A:133 , LEU A:134 , ASP A:163 , ALA A:164 , ILE A:165 , MG A:202 , HOH A:308 , HOH A:325 , HOH A:340 , HOH A:401 , HOH A:402 , HOH A:403 , ARG C:75
BINDING SITE FOR RESIDUE GTP A 201
3
AC7
SOFTWARE
ARG A:101 , ARG C:101
BINDING SITE FOR RESIDUE UNX C 501
4
AC9
SOFTWARE
GLN A:45
BINDING SITE FOR RESIDUE UNX A 503
5
BC1
SOFTWARE
LYS A:142 , ARG B:99
BINDING SITE FOR RESIDUE UNX A 504
6
BC2
SOFTWARE
GLU A:168 , HOH A:341 , SER B:140 , VAL B:141
BINDING SITE FOR RESIDUE UNX B 506
7
BC3
SOFTWARE
ARG A:77 , ASN A:78 , TRP A:80 , GLU A:81
BINDING SITE FOR RESIDUE UNX A 508
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_027643 (T31M, chain A, )
2: VAR_027644 (T31R, chain A, )
3: VAR_064184 (A89V, chain A, )
4: VAR_071405 (I94T, chain A, )
5: VAR_027645 (G169A, chain A, )
6: VAR_027646 (L170W, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_027643
T
31
M
ARL6_HUMAN
Disease (BBS3)
---
A
T
31
M
2
UniProt
VAR_027644
T
31
R
ARL6_HUMAN
Disease (BBS3)
---
A
T
31
R
3
UniProt
VAR_064184
A
89
V
ARL6_HUMAN
Disease (RP55)
---
A
A
89
V
4
UniProt
VAR_071405
I
94
T
ARL6_HUMAN
Disease (BBS3)
---
A
I
94
T
5
UniProt
VAR_027645
G
169
A
ARL6_HUMAN
Disease (BBS3)
---
A
G
169
A
6
UniProt
VAR_027646
L
170
W
ARL6_HUMAN
Disease (BBS3)
---
A
L
170
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
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End label:
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2h57a_ (A:)
1b: SCOP_d2h57b_ (B:)
1c: SCOP_d2h57c_ (C:)
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Classes
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
1a
d2h57a_
A:
1b
d2h57b_
B:
1c
d2h57c_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_2h57B00 (B:16-182)
1b: CATH_2h57C00 (C:17-182)
1c: CATH_2h57A00 (A:17-181)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2h57B00
B:16-182
1b
2h57C00
C:17-182
1c
2h57A00
A:17-181
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (92 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Biol.Unit 2 (31 KB)
Header - Biol.Unit 2
Biol.Unit 3 (30 KB)
Header - Biol.Unit 3
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