2GUG - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   NAD-DEPENDENT FORMATE DEHYDROGENASE FROM PSEUDOMONAS SP.101 IN COMPLEX WITH FORMATE

Authors :   E. V. Filippova, K. M. Polyakov, T. V. Tikhonova, K. M. Boiko, V. I. Tishk V. O. Popov

Date :   30 Apr 06 (Deposition) - 16 May 06 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.28

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)

Keywords :   Oxidoreductase (Aldehude (D), Nad+(A)), Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. V. Filippova, K. M. Polyakov, T. V. Tikhonova, T. N. Stekhanova, K. M. Boiko, I. G. Sadihov, V. I. Tishkov, N. Labrou, V. O. Popov
Crystal Structure Of The Complex Of Nad-Dependent Formate Dehydrogenase From Metylotrophic Bacterium Pseudomonas Sp. 101 With Formate.
Kristallografiya V. 51 663 2006
PubMed: search

Molecule 1 - FORMATE DEHYDROGENASE
	Chains	:	A, B, C, D
	EC Number	:	1.2.1.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21
	Expression System Plasmid	:	PPSFDH8A
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	PSEUDOMONAS SP.
	Organism Taxid	:	33067
	Strain	:	101
	Synonym	:	NAD-DEPENDENT FORMATE DEHYDROGENASE, FDH

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 15)

No.	Name	Count	Type	Full Name
1	FMT	3	Ligand/Ion	FORMIC ACID
2	OCS	4	Mod. Amino Acid	CYSTEINESULFONIC ACID
3	PEG	6	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PG4	2	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 1 (4, 10)

No.	Name	Count	Type	Full Name
1	FMT	2	Ligand/Ion	FORMIC ACID
2	OCS	2	Mod. Amino Acid	CYSTEINESULFONIC ACID
3	PEG	5	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Biological Unit 2 (4, 5)

No.	Name	Count	Type	Full Name
1	FMT	1	Ligand/Ion	FORMIC ACID
2	OCS	2	Mod. Amino Acid	CYSTEINESULFONIC ACID
3	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:184 , PEG A:480 , HOH A:526 , ASP C:13 , THR C:18 , TYR C:19	BINDING SITE FOR RESIDUE PG4 A 478
02	AC2	SOFTWARE	THR B:18 , SER D:184 , HIS D:185 , GLU D:298 , TYR D:326 , HOH D:550	BINDING SITE FOR RESIDUE PG4 D 480
03	AC3	SOFTWARE	PRO A:97 , PHE A:98 , GLY A:121 , ILE A:122 , ASN A:146 , PEG A:476 , HOH A:587	BINDING SITE FOR RESIDUE FMT A 479
04	AC4	SOFTWARE	PRO B:97 , PHE B:98 , ILE B:122 , ASN B:146 , HOH B:499	BINDING SITE FOR RESIDUE FMT B 401
05	AC5	SOFTWARE	PRO C:97 , PHE C:98 , GLY C:121 , ILE C:122 , ASN C:146 , HOH C:531	BINDING SITE FOR RESIDUE FMT C 401
06	AC6	SOFTWARE	ILE A:122 , ASN A:146 , SER A:147 , VAL A:150 , ILE A:202 , THR A:282 , FMT A:479 , HOH A:554	BINDING SITE FOR RESIDUE PEG A 476
07	AC7	SOFTWARE	PRO A:31 , TYR A:144 , ARG A:201 , ALA A:205 , ARG A:208 , ARG A:209 , GLU C:190 , ASP C:214	BINDING SITE FOR RESIDUE PEG A 477
08	AC8	SOFTWARE	GLU A:298 , TYR A:326 , PG4 A:478	BINDING SITE FOR RESIDUE PEG A 480
09	AC9	SOFTWARE	LEU B:204	BINDING SITE FOR RESIDUE PEG B 481
10	BC1	SOFTWARE	ALA C:199 , GLY C:200	BINDING SITE FOR RESIDUE PEG C 482
11	BC2	SOFTWARE	GLU C:298 , TYR C:326	BINDING SITE FOR RESIDUE PEG C 483

(no "SS Bond" information available for 2GUG)

Asymmetric Unit

No.	Residues
1	His A:263	-	Met A:264
2	Phe A:311	-	Pro A:312
3	Gln A:313	-	Pro A:314
4	Phe B:311	-	Pro B:312
5	Gln B:313	-	Pro B:314
6	Phe C:311	-	Pro C:312
7	Gln C:313	-	Pro C:314
8	Phe D:311	-	Pro D:312
9	Gln D:313	-	Pro D:314

(no "SAP(SNP)/Variant" information available for 2GUG)

Asymmetric Unit (3, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	D_2_HYDROXYACID_DH_1	PS00065	D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.	FDH_PSESR	195-222	4	A:194-221 B:194-221 C:194-221 D:194-221
2	D_2_HYDROXYACID_DH_2	PS00670	D-isomer specific 2-hydroxyacid dehydrogenases signature 2.	FDH_PSESR	245-267	4	A:244-266 B:244-266 C:244-266 D:244-266
3	D_2_HYDROXYACID_DH_3	PS00671	D-isomer specific 2-hydroxyacid dehydrogenases signature 3.	FDH_PSESR	274-290	4	A:273-289 B:273-289 C:273-289 D:273-289

Biological Unit 1 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	D_2_HYDROXYACID_DH_1	PS00065	D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.	FDH_PSESR	195-222	2	A:194-221 - C:194-221 -
2	D_2_HYDROXYACID_DH_2	PS00670	D-isomer specific 2-hydroxyacid dehydrogenases signature 2.	FDH_PSESR	245-267	2	A:244-266 - C:244-266 -
3	D_2_HYDROXYACID_DH_3	PS00671	D-isomer specific 2-hydroxyacid dehydrogenases signature 3.	FDH_PSESR	274-290	2	A:273-289 - C:273-289 -

Biological Unit 2 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	D_2_HYDROXYACID_DH_1	PS00065	D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.	FDH_PSESR	195-222	2	- B:194-221 - D:194-221
2	D_2_HYDROXYACID_DH_2	PS00670	D-isomer specific 2-hydroxyacid dehydrogenases signature 2.	FDH_PSESR	245-267	2	- B:244-266 - D:244-266
3	D_2_HYDROXYACID_DH_3	PS00671	D-isomer specific 2-hydroxyacid dehydrogenases signature 3.	FDH_PSESR	274-290	2	- B:273-289 - D:273-289

(no "Exon" information available for 2GUG)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:368
 aligned with FDH_PSESR | P33160 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:374
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371    
            FDH_PSESR     2 AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2gugA01 A:1-145,A:336-374 NAD(P)-binding Rossmann-like Domain                                                                                    2gugA02 A:146-335 NAD(P)-binding Rossmann-like Domain                                                                                                                                         2gugA01 A:1-145,A:336-374               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee................................................hhhhhhhhhhhh..eeeee.......hhhhhhhh...eeee........hhhhhhhh....eeee........hhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh........eeeee..hhhhhhhhhhhhhhh.eeeee.....hhhhhhhh..eee.hhhhhhhhh.eeee...------.....hhhhhh...eeeee..hhhhhhhhhhhhhhhh..eeeeee...........hhhhh.............hhhhhhhhhhhhhhhhhhhhh....hhh.eeee..ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_DH_1        ----------------------D_2_HYDROXYACID_DH_2   ------D_2_HYDROXYACID_D------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gug A   1 AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCP------HMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILEcFFEGRPIRDEYLIVQGGALA 374
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250     |   -  |    270       280       290       300       310       320       330       340       350   |   360       370    
                                                                                                                                                                                                                                                                                         256    263                                                                                        354-OCS

Chain B from PDB  Type:PROTEIN  Length:369
 aligned with FDH_PSESR | P33160 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:369
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361         
            FDH_PSESR     2 AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQ 370
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2gugB01 B:1-145,B:336-369 NAD(P)-binding Rossmann-like Domain                                                                                    2gugB02 B:146-335 NAD(P)-binding Rossmann-like Domain                                                                                                                                         2gugB01 B:1-145,B:336-369          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.............................................hhhhhhhhhhhhhh...eeeee.......hhhhhhhh...eeee........hhhhhhhh....eeee........hhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh........eeeee..hhhhhhhhhhhhhhh.eeeee.....hhhhhhhhh.ee..hhhhhhhhh.eeee............hhhhhh......eeee..hhhhhhhhhhhhhhhhh...eee............hhhhh.............hhhhhhhhhhhhhhhhhhhhhh.......eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_DH_1        ----------------------D_2_HYDROXYACID_DH_2   ------D_2_HYDROXYACID_D-------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gug B   1 AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILEcFFEGRPIRDEYLIVQ 369
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   |   360         
                                                                                                                                                                                                                                                                                                                                                                                           354-OCS

Chain C from PDB  Type:PROTEIN  Length:369
 aligned with FDH_PSESR | P33160 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:369
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361         
            FDH_PSESR     2 AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQ 370
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2gugC01 C:1-145,C:336-369 NAD(P)-binding Rossmann-like Domain                                                                                    2gugC02 C:146-335 NAD(P)-binding Rossmann-like Domain                                                                                                                                         2gugC01 C:1-145,C:336-369          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee................................................hhhhhhhhhhhh..eeeee.......hhhhhhhh...eeee........hhhhhhhh....eeee........hhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh........eeeee..hhhhhhhhhhhhhhh.eeeee.....hhhhhhhhh.ee..hhhhhhhhh.eeee..............hhhhhh...eeeee..hhhhhhhhhhhhhhhh..eeeeee.............................hhhhhhhhhhhhhhhhhhhhh........eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_DH_1        ----------------------D_2_HYDROXYACID_DH_2   ------D_2_HYDROXYACID_D-------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gug C   1 AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILEcFFEGRPIRDEYLIVQ 369
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   |   360         
                                                                                                                                                                                                                                                                                                                                                                                           354-OCS

Chain D from PDB  Type:PROTEIN  Length:362
 aligned with FDH_PSESR | P33160 from UniProtKB/Swiss-Prot  Length:401

    Alignment length:369
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361         
            FDH_PSESR     2 AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQ 370
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2gugD01 D:1-145,D:336-369 NAD(P)-binding Rossmann-like Domain                                                                                    2gugD02 D:146-335 NAD(P)-binding Rossmann-like Domain                                                                                                                                         2gugD01 D:1-145,D:336-369          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee................................................hhhhhhhhhhh...eeeee.......hhhhhhhh...eeee........hhhhhhhh....eeee........hhhhhhhh..eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh........eeeee..hhhhhhhhhhhhhhh.eeeee.....hhhhhhhh..ee..hhhhhhhhh.eeee...-------..hhhhhh.....eeeee..hhhhhhhhhhhhhhhhh.eeeeee...........hhhhh.............hhhhhhhhhhhhhhhhhhhhh....hhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D_2_HYDROXYACID_DH_1        ----------------------D_2_HYDROXYACID_DH_2   ------D_2_HYDROXYACID_D-------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gug D   1 AKVLCVLYDDPVDGYPKTYARDDLPKIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCP-------MINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILEcFFEGRPIRDEYLIVQ 369
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250     |   -   |   270       280       290       300       310       320       330       340       350   |   360         
                                                                                                                                                                                                                                                                                         256     264                                                                                       354-OCS

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2GUG)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

101 (Pseudomonas sp) (4)

1a	2gugB02	B:146-335
1b	2gugA01	A:1-145,A:336-374
1c	2gugB01	B:1-145,B:336-369
1d	2gugC01	C:1-145,C:336-369
1e	2gugD01	D:1-145,D:336-369
1f	2gugC02	C:146-335
1g	2gugA02	A:146-335
1h	2gugD02	D:146-335

(no "Pfam Domain" information available for 2GUG)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (FDH_PSESR | P33160)

molecular function
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0008863	formate dehydrogenase (NAD+) activity	Catalysis of the reaction: formate + NAD(+) = CO(2) + NADH.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		FMT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		OCS	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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		PG4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Gln A:313 - Pro A:314	[ RasMol ]
		Gln B:313 - Pro B:314	[ RasMol ]
		Gln C:313 - Pro C:314	[ RasMol ]
		Gln D:313 - Pro D:314	[ RasMol ]
		His A:263 - Met A:264	[ RasMol ]
		Phe A:311 - Pro A:312	[ RasMol ]
		Phe B:311 - Pro B:312	[ RasMol ]
		Phe C:311 - Pro C:312	[ RasMol ]
		Phe D:311 - Pro D:312	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
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	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2gug
		Family and Domain Information	:	ProDom \| SYSTERS
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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	FDH_PSESR \| P33160
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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	1.2.1.2
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
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Access by UniProt ID/Accession number
	FDH_PSESR \| P33160
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	FDH_PSESR \| P33160	:	2go1 2nac 2nad

2nac	APO-FORM
2nad	COMPLEX WITH NAD AND AZIDE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 15)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (9, 9)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 12)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (1, 8)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

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Databases

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File