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2GUG
Asym. Unit
Info
Asym.Unit (248 KB)
Biol.Unit 1 (125 KB)
Biol.Unit 2 (122 KB)
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(1)
Title
:
NAD-DEPENDENT FORMATE DEHYDROGENASE FROM PSEUDOMONAS SP.101 IN COMPLEX WITH FORMATE
Authors
:
E. V. Filippova, K. M. Polyakov, T. V. Tikhonova, K. M. Boiko, V. I. Tishk V. O. Popov
Date
:
30 Apr 06 (Deposition) - 16 May 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.28
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Oxidoreductase (Aldehude (D), Nad+(A)), Oxidoreductase
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Reference
:
E. V. Filippova, K. M. Polyakov, T. V. Tikhonova, T. N. Stekhanova, K. M. Boiko, I. G. Sadihov, V. I. Tishkov, N. Labrou, V. O. Popov
Crystal Structure Of The Complex Of Nad-Dependent Formate Dehydrogenase From Metylotrophic Bacterium Pseudomonas Sp. 101 With Formate.
Kristallografiya V. 51 663 2006
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
2a: CYSTEINESULFONIC ACID (OCSa)
2b: CYSTEINESULFONIC ACID (OCSb)
2c: CYSTEINESULFONIC ACID (OCSc)
2d: CYSTEINESULFONIC ACID (OCSd)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
3e: DI(HYDROXYETHYL)ETHER (PEGe)
3f: DI(HYDROXYETHYL)ETHER (PEGf)
4a: TETRAETHYLENE GLYCOL (PG4a)
4b: TETRAETHYLENE GLYCOL (PG4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FMT
3
Ligand/Ion
FORMIC ACID
2
OCS
4
Mod. Amino Acid
CYSTEINESULFONIC ACID
3
PEG
6
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PG4
2
Ligand/Ion
TETRAETHYLENE GLYCOL
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:184 , PEG A:480 , HOH A:526 , ASP C:13 , THR C:18 , TYR C:19
BINDING SITE FOR RESIDUE PG4 A 478
02
AC2
SOFTWARE
THR B:18 , SER D:184 , HIS D:185 , GLU D:298 , TYR D:326 , HOH D:550
BINDING SITE FOR RESIDUE PG4 D 480
03
AC3
SOFTWARE
PRO A:97 , PHE A:98 , GLY A:121 , ILE A:122 , ASN A:146 , PEG A:476 , HOH A:587
BINDING SITE FOR RESIDUE FMT A 479
04
AC4
SOFTWARE
PRO B:97 , PHE B:98 , ILE B:122 , ASN B:146 , HOH B:499
BINDING SITE FOR RESIDUE FMT B 401
05
AC5
SOFTWARE
PRO C:97 , PHE C:98 , GLY C:121 , ILE C:122 , ASN C:146 , HOH C:531
BINDING SITE FOR RESIDUE FMT C 401
06
AC6
SOFTWARE
ILE A:122 , ASN A:146 , SER A:147 , VAL A:150 , ILE A:202 , THR A:282 , FMT A:479 , HOH A:554
BINDING SITE FOR RESIDUE PEG A 476
07
AC7
SOFTWARE
PRO A:31 , TYR A:144 , ARG A:201 , ALA A:205 , ARG A:208 , ARG A:209 , GLU C:190 , ASP C:214
BINDING SITE FOR RESIDUE PEG A 477
08
AC8
SOFTWARE
GLU A:298 , TYR A:326 , PG4 A:478
BINDING SITE FOR RESIDUE PEG A 480
09
AC9
SOFTWARE
LEU B:204
BINDING SITE FOR RESIDUE PEG B 481
10
BC1
SOFTWARE
ALA C:199 , GLY C:200
BINDING SITE FOR RESIDUE PEG C 482
11
BC2
SOFTWARE
GLU C:298 , TYR C:326
BINDING SITE FOR RESIDUE PEG C 483
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: D_2_HYDROXYACID_DH_1 (A:194-221,B:194-221,C:194-221,D:19...)
2: D_2_HYDROXYACID_DH_2 (A:244-266,B:244-266,C:244-266,D:24...)
3: D_2_HYDROXYACID_DH_3 (A:273-289,B:273-289,C:273-289,D:27...)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
D_2_HYDROXYACID_DH_1
PS00065
D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.
FDH_PSESR
195-222
4
A:194-221
B:194-221
C:194-221
D:194-221
2
D_2_HYDROXYACID_DH_2
PS00670
D-isomer specific 2-hydroxyacid dehydrogenases signature 2.
FDH_PSESR
245-267
4
A:244-266
B:244-266
C:244-266
D:244-266
3
D_2_HYDROXYACID_DH_3
PS00671
D-isomer specific 2-hydroxyacid dehydrogenases signature 3.
FDH_PSESR
274-290
4
A:273-289
B:273-289
C:273-289
D:273-289
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2gugB02 (B:146-335)
1b: CATH_2gugA01 (A:1-145,A:336-374)
1c: CATH_2gugB01 (B:1-145,B:336-369)
1d: CATH_2gugC01 (C:1-145,C:336-369)
1e: CATH_2gugD01 (D:1-145,D:336-369)
1f: CATH_2gugC02 (C:146-335)
1g: CATH_2gugA02 (A:146-335)
1h: CATH_2gugD02 (D:146-335)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
101 (Pseudomonas sp)
(4)
1a
2gugB02
B:146-335
1b
2gugA01
A:1-145,A:336-374
1c
2gugB01
B:1-145,B:336-369
1d
2gugC01
C:1-145,C:336-369
1e
2gugD01
D:1-145,D:336-369
1f
2gugC02
C:146-335
1g
2gugA02
A:146-335
1h
2gugD02
D:146-335
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Pfam Domains
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Asym.Unit (248 KB)
Header - Asym.Unit
Biol.Unit 1 (125 KB)
Header - Biol.Unit 1
Biol.Unit 2 (122 KB)
Header - Biol.Unit 2
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