2GLZ - JenaLib

Title :   CRYSTAL STRUCTURE OF A FORMYLMETHANOFURAN DEHYDROGENASE SUBUNIT E-LIKE PROTEIN (DHAF_2992) FROM DESULFITOBACTERIUM HAFNIENSE DCB-2 AT 1.45 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   05 Apr 06 (Deposition) - 18 Apr 06 (Release) - 24 Oct 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.45

Chains :   Asym./Biol. Unit : A,B

Keywords :   Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. L. Axelrod, D. Das, P. Abdubek, T. Astakhova, C. Bakolitsa, D. Carlton, C. Chen, H. J. Chiu, T. Clayton, M. C. Deller, L. Duan, K. Ellrott, C. L. Farr, J. Feuerhelm, J. C. Grant, A. Grzechnik, G. W. Han, L. Jaroszewski, K. K. Jin, H. E. Klock, M. W. Knuth, P. Kozbial S. S. Krishna, A. Kumar, W. W. Lam, D. Marciano, D. Mcmullan, M. D. Miller, A. T. Morse, E. Nigoghossian, A. Nopakun, L. Okach, C. Puckett, R. Reyes, N. Sefcovic, H. J. Tien, C. B. Trame, H. Van Den Bedem, D. Weekes, T. Wooten, Q. Xu, K. O. Hodgson, J. Wooley M. A. Elsliger, A. M. Deacon, A. Godzik, S. A. Lesley, I. A. Wilson
Structures Of Three Members Of Pfam Pf02663 (Fmde) Implicated In Microbial Methanogenesis Reveal A Conserved Alpha+Beta Core Domain And An Auxiliary C-Terminal Treble-Clef Zinc Finger.
Acta Crystallogr. , Sect. F V. 66 1335 2010
PubMed-ID: 20944230 | Reference-DOI: 10.1107/S1744309110020166

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 26)

Sites (22, 22)

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:15 , HIS A:17 , CYS A:19 , CYS A:55	BINDING SITE FOR RESIDUE ZN A 200
02	AC2	SOFTWARE	HIS A:15 , HIS A:17 , CYS A:19 , CYS A:55	BINDING SITE FOR RESIDUE NI A 201
03	AC3	SOFTWARE	HIS B:15 , HIS B:17 , CYS B:19 , CYS B:55	BINDING SITE FOR RESIDUE ZN B 200
04	AC4	SOFTWARE	HIS B:15 , HIS B:17 , CYS B:19 , CYS B:55	BINDING SITE FOR RESIDUE NI B 201
05	AC5	SOFTWARE	HIS A:17 , GLU B:45 , ARG B:70 , LYS B:150 , HOH B:226	BINDING SITE FOR RESIDUE EDO B 202
06	AC6	SOFTWARE	CYS A:19 , PRO A:20 , HOH A:313 , HOH A:314	BINDING SITE FOR RESIDUE EDO A 202
07	AC7	SOFTWARE	TRP A:8 , THR A:18 , HOH A:293 , HOH A:325 , GLN B:128	BINDING SITE FOR RESIDUE EDO A 203
08	AC8	SOFTWARE	ARG B:34 , GLU B:35 , GLU B:135 , TYR B:141 , HOH B:243	BINDING SITE FOR RESIDUE EDO B 203
09	AC9	SOFTWARE	ASP B:21 , LEU B:24 , TYR B:81 , LEU B:106 , ARG B:110 , HOH B:335	BINDING SITE FOR RESIDUE EDO B 204
10	BC1	SOFTWARE	LYS A:49 , ILE A:75 , GLU A:76	BINDING SITE FOR RESIDUE EDO A 204
11	BC2	SOFTWARE	ILE A:38 , ARG A:39 , PRO A:40 , EDO A:207 , HOH A:361 , GLN B:147 , HOH B:397	BINDING SITE FOR RESIDUE EDO B 205
12	BC3	SOFTWARE	ILE A:38 , HOH A:407 , EDO B:208 , EDO B:209 , HOH B:397	BINDING SITE FOR RESIDUE EDO B 206
13	BC4	SOFTWARE	GLY B:146 , GLN B:147 , EDO B:209 , HOH B:292 , HOH B:397 , HOH B:415	BINDING SITE FOR RESIDUE EDO B 207
14	BC5	SOFTWARE	ILE A:38 , EDO B:206 , EDO B:209 , HOH B:248 , HOH B:277 , HOH B:337	BINDING SITE FOR RESIDUE EDO B 208
15	BC6	SOFTWARE	PRO B:145 , GLY B:146 , EDO B:206 , EDO B:207 , EDO B:208	BINDING SITE FOR RESIDUE EDO B 209
16	BC7	SOFTWARE	SER B:136 , HOH B:235	BINDING SITE FOR RESIDUE EDO B 210
17	BC8	SOFTWARE	ARG A:70 , LYS A:150 , HOH A:236 , HIS B:17 , CYS B:55	BINDING SITE FOR RESIDUE EDO A 205
18	BC9	SOFTWARE	TYR B:129 , LEU B:133 , HOH B:262 , HOH B:280 , HOH B:423	BINDING SITE FOR RESIDUE EDO B 211
19	CC1	SOFTWARE	HOH A:237 , THR B:88 , GLY B:89	BINDING SITE FOR RESIDUE EDO B 212
20	CC2	SOFTWARE	ASN B:121 , GLU B:125 , HOH B:411	BINDING SITE FOR RESIDUE EDO B 213
21	CC3	SOFTWARE	ASP A:142 , LYS A:143	BINDING SITE FOR RESIDUE EDO A 206
22	CC4	SOFTWARE	ARG A:39 , PRO A:40 , ALA A:41 , PRO A:42 , HOH A:307 , EDO B:205	BINDING SITE FOR RESIDUE EDO A 207

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:149
 aligned with B8FYU2_DESHD | B8FYU2 from UniProtKB/TrEMBL  Length:152

    Alignment length:149
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142         
         B8FYU2_DESHD     3 VEKTPWELVIDFHGHTCPDIALGYRIAQLAQREMGIRPAPDSECLVKAYTQSCALDAIQVLNKATIGRHALIIEETHRYMYQFHFTGTQDIHQFTVSPAVLDHLETLRHPDLSPRERQNKVLEGVQYVLTLEESAFCHYDKIPGQLSKI 151
               SCOP domains d2glza1 A:3-151 FwdE-like protein DSY1837 (Dhaf_2201)                                                                                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh........eeeee.....hhhhhhhhh........eee......eeeeee....eeeeeeehhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhheeeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2glz A   3 VEKTPWELVIDFHGHTCPDIALGYRIAQLAQREmGIRPAPDSECLVKAYTQSCALDAIQVLNKATIGRHALIIEETHRYmYQFHFTGTQDIHQFTVSPAVLDHLETLRHPDLSPRERQNKVLEGVQYVLTLEESAFCHYDKIPGQLSKI 151
                                    12        22        32   |    42        52        62        72        82        92       102       112       122       132       142         
                                                            36-MSE                                        82-MSE

Chain B from PDB  Type:PROTEIN  Length:148
 aligned with B8FYU2_DESHD | B8FYU2 from UniProtKB/TrEMBL  Length:152

    Alignment length:148
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143        
         B8FYU2_DESHD     4 EKTPWELVIDFHGHTCPDIALGYRIAQLAQREMGIRPAPDSECLVKAYTQSCALDAIQVLNKATIGRHALIIEETHRYMYQFHFTGTQDIHQFTVSPAVLDHLETLRHPDLSPRERQNKVLEGVQYVLTLEESAFCHYDKIPGQLSKI 151
               SCOP domains d2glzb_ B: FwdE-like protein DSY1837 (Dhaf_2201)                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh........eeeee....hhhhhhhhhh........eee......eeeeee....eeeeeeehhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhheeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2glz B   4 EKTPWELVIDFHGHTCPDIALGYRIAQLAQREmGIRPAPDSECLVKAYTQSCALDAIQVLNKATIGRHALIIEETHRYmYQFHFTGTQDIHQFTVSPAVLDHLETLRHPDLSPRERQNKVLEGVQYVLTLEESAFCHYDKIPGQLSKI 151
                                    13        23        33  |     43        53        63        73        83        93       103       113       123       133       143        
                                                           36-MSE                                        82-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

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