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2GLZ
Asym. Unit
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Asym.Unit (69 KB)
Biol.Unit 1 (62 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A FORMYLMETHANOFURAN DEHYDROGENASE SUBUNIT E-LIKE PROTEIN (DHAF_2992) FROM DESULFITOBACTERIUM HAFNIENSE DCB-2 AT 1.45 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
05 Apr 06 (Deposition) - 18 Apr 06 (Release) - 24 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. L. Axelrod, D. Das, P. Abdubek, T. Astakhova, C. Bakolitsa, D. Carlton, C. Chen, H. J. Chiu, T. Clayton, M. C. Deller, L. Duan, K. Ellrott, C. L. Farr, J. Feuerhelm, J. C. Grant, A. Grzechnik, G. W. Han, L. Jaroszewski, K. K. Jin, H. E. Klock, M. W. Knuth, P. Kozbial S. S. Krishna, A. Kumar, W. W. Lam, D. Marciano, D. Mcmullan, M. D. Miller, A. T. Morse, E. Nigoghossian, A. Nopakun, L. Okach, C. Puckett, R. Reyes, N. Sefcovic, H. J. Tien, C. B. Trame, H. Van Den Bedem, D. Weekes, T. Wooten, Q. Xu, K. O. Hodgson, J. Wooley M. A. Elsliger, A. M. Deacon, A. Godzik, S. A. Lesley, I. A. Wilson
Structures Of Three Members Of Pfam Pf02663 (Fmde) Implicated In Microbial Methanogenesis Reveal A Conserved Alpha+Beta Core Domain And An Auxiliary C-Terminal Treble-Clef Zinc Finger.
Acta Crystallogr. , Sect. F V. 66 1335 2010
[
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Hetero Components
(4, 26)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
3a: NICKEL (II) ION (NIa)
3b: NICKEL (II) ION (NIb)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
18
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
3
NI
2
Ligand/Ion
NICKEL (II) ION
4
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:15 , HIS A:17 , CYS A:19 , CYS A:55
BINDING SITE FOR RESIDUE ZN A 200
02
AC2
SOFTWARE
HIS A:15 , HIS A:17 , CYS A:19 , CYS A:55
BINDING SITE FOR RESIDUE NI A 201
03
AC3
SOFTWARE
HIS B:15 , HIS B:17 , CYS B:19 , CYS B:55
BINDING SITE FOR RESIDUE ZN B 200
04
AC4
SOFTWARE
HIS B:15 , HIS B:17 , CYS B:19 , CYS B:55
BINDING SITE FOR RESIDUE NI B 201
05
AC5
SOFTWARE
HIS A:17 , GLU B:45 , ARG B:70 , LYS B:150 , HOH B:226
BINDING SITE FOR RESIDUE EDO B 202
06
AC6
SOFTWARE
CYS A:19 , PRO A:20 , HOH A:313 , HOH A:314
BINDING SITE FOR RESIDUE EDO A 202
07
AC7
SOFTWARE
TRP A:8 , THR A:18 , HOH A:293 , HOH A:325 , GLN B:128
BINDING SITE FOR RESIDUE EDO A 203
08
AC8
SOFTWARE
ARG B:34 , GLU B:35 , GLU B:135 , TYR B:141 , HOH B:243
BINDING SITE FOR RESIDUE EDO B 203
09
AC9
SOFTWARE
ASP B:21 , LEU B:24 , TYR B:81 , LEU B:106 , ARG B:110 , HOH B:335
BINDING SITE FOR RESIDUE EDO B 204
10
BC1
SOFTWARE
LYS A:49 , ILE A:75 , GLU A:76
BINDING SITE FOR RESIDUE EDO A 204
11
BC2
SOFTWARE
ILE A:38 , ARG A:39 , PRO A:40 , EDO A:207 , HOH A:361 , GLN B:147 , HOH B:397
BINDING SITE FOR RESIDUE EDO B 205
12
BC3
SOFTWARE
ILE A:38 , HOH A:407 , EDO B:208 , EDO B:209 , HOH B:397
BINDING SITE FOR RESIDUE EDO B 206
13
BC4
SOFTWARE
GLY B:146 , GLN B:147 , EDO B:209 , HOH B:292 , HOH B:397 , HOH B:415
BINDING SITE FOR RESIDUE EDO B 207
14
BC5
SOFTWARE
ILE A:38 , EDO B:206 , EDO B:209 , HOH B:248 , HOH B:277 , HOH B:337
BINDING SITE FOR RESIDUE EDO B 208
15
BC6
SOFTWARE
PRO B:145 , GLY B:146 , EDO B:206 , EDO B:207 , EDO B:208
BINDING SITE FOR RESIDUE EDO B 209
16
BC7
SOFTWARE
SER B:136 , HOH B:235
BINDING SITE FOR RESIDUE EDO B 210
17
BC8
SOFTWARE
ARG A:70 , LYS A:150 , HOH A:236 , HIS B:17 , CYS B:55
BINDING SITE FOR RESIDUE EDO A 205
18
BC9
SOFTWARE
TYR B:129 , LEU B:133 , HOH B:262 , HOH B:280 , HOH B:423
BINDING SITE FOR RESIDUE EDO B 211
19
CC1
SOFTWARE
HOH A:237 , THR B:88 , GLY B:89
BINDING SITE FOR RESIDUE EDO B 212
20
CC2
SOFTWARE
ASN B:121 , GLU B:125 , HOH B:411
BINDING SITE FOR RESIDUE EDO B 213
21
CC3
SOFTWARE
ASP A:142 , LYS A:143
BINDING SITE FOR RESIDUE EDO A 206
22
CC4
SOFTWARE
ARG A:39 , PRO A:40 , ALA A:41 , PRO A:42 , HOH A:307 , EDO B:205
BINDING SITE FOR RESIDUE EDO A 207
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2glza1 (A:3-151)
1b: SCOP_d2glzb_ (B:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
FwdE-like
(2)
Family
:
FwdE-like
(2)
Protein domain
:
FwdE-like protein DSY1837 (Dhaf_2201)
(1)
Desulfitobacterium hafniense [TaxId: 49338]
(1)
1a
d2glza1
A:3-151
1b
d2glzb_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (69 KB)
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