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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TETRA MUNTANT (T66G,R67G,F68G, Y69G) OF BACTERIAL ADHESIN FADA
 
Authors :  S. Nithianantham, M. Xu, N. Wu, M. Shoham, Y. W. Han
Date :  04 Apr 06  (Deposition) - 10 Apr 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Antiparallel Helix-Loop-Helix, Fada Gly4 Mutant, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Nithianantham, M. Xu, N. Wu, Y. W. Han, M. Shoham
Crystallization And Preliminary X-Ray Data Of The Fada Adhesin From Fusobacterium Nucleatum.
Acta Crystallogr. , Sect. F V. 62 1215 2006
PubMed-ID: 17142900  |  Reference-DOI: 10.1107/S1744309106045593
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ADHESION A
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PYH1378
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 19-129
    Mutation: YES
    Organism Scientific: FUSOBACTERIUM NUCLEATUM
    Organism Taxid: 851

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2GL2)

(-) Sites  (0, 0)

(no "Site" information available for 2GL2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2GL2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2GL2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GL2)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2GL2)

(-) Sequences/Alignments

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   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
 aligned with Q5I6B0_FUSNU | Q5I6B0 from UniProtKB/TrEMBL  Length:129

    Alignment length:109
                                                                                                                                     129 
                                    31        41        51        61        71        81        91       101       111       121       | 
         Q5I6B0_FUSNU    22 AASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALRAGN-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2gl2 A   4 AASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEA------SQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALRAGNL 112
                                    13        23        33        43        53        63|      |73        83        93       103         
                                                                                       64     71                                         


Chain B from PDB  Type:PROTEIN  Length:109
 aligned with Q5I6B0_FUSNU | Q5I6B0 from UniProtKB/TrEMBL  Length:129

    Alignment length:115
                                                                                                                                     129       
                                    31        41        51        61        71        81        91       101       111       121       | -     
         Q5I6B0_FUSNU    22 AASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALRAGN-------   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 2gl2 B   4 AASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEA------SQYQELASKYEDALKKLEAEMEQQKAVISDFEKIQALRAGNLEHHHHH 118
                                    13        23        33        43        53        63|      |73        83        93       103       113     
                                                                                       64     71
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2GL2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2GL2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GL2)

(-) Gene Ontology  (0, 0)

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 Related Entries

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        Q5I6B0_FUSNU | Q5I6B0: 3etw 3etx 3ety 3etz

(-) Related Entries Specified in the PDB File

2avr 2AVR IS A NATIVE PROTEIN AND THE CURRENT STRUCTURE IS A TETRA MUNTANT OF FADA
2gkq
2gld