2GH6 - JenaLib

Title :   CRYSTAL STRUCTURE OF A HDAC-LIKE PROTEIN WITH 9,9,9-TRIFLUORO-8-OXO-N-PHENYLNONAN AMIDE BOUND

Authors :   T. K. Nielsen, C. Hildmann, D. Riester, D. Wegener, A. Schwienhorst, R.

Date :   26 Mar 06 (Deposition) - 20 Mar 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A,B,C,D  (1x)

Keywords :   Histone Deacetylase, Zinc-Ion, Trifluoromethyl Ketone, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. K. Nielsen, C. Hildmann, D. Riester, D. Wegener, A. Schwienhorst, R. Ficner
Complex Structure Of A Bacterial Class 2 Histone Deacetylas Homologue With A Trifluoromethylketone Inhibitor.
Acta Crystallogr. , Sect. F V. 63 270 2007
PubMed-ID: 17401192 | Reference-DOI: 10.1107/S1744309107012377

Compounds

Molecule 1 - HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE
	Chains	:	A, B, C, D
	EC Number	:	3.5.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE
	Expression System Strain	:	M15
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	HDAH, HDAH1
	Organism Scientific	:	ALCALIGENACEAE BACTERIUM FB188
	Organism Taxid	:	242601
	Other Details	:	SOURCE ORGANISM SYNONYM BORDETELLA SP. (STRAIN FB188)
	Strain	:	DSM 11172
	Synonym	:	HDAC-LIKE AMIDOHYDROLASE; HDAH

Structural Features

Chains, Units

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 16)

Asymmetric Unit (3, 16)

No.	Name	Count	Type	Full Name
1	CF3	4	Ligand/Ion	9,9,9-TRIFLUORO-8-OXO-N-PHENYLNONANAMIDE
2	K	8	Ligand/Ion	POTASSIUM ION
3	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CF3	1	Ligand/Ion	9,9,9-TRIFLUORO-8-OXO-N-PHENYLNONANAMIDE
2	K	-1	Ligand/Ion	POTASSIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CF3	1	Ligand/Ion	9,9,9-TRIFLUORO-8-OXO-N-PHENYLNONANAMIDE
2	K	-1	Ligand/Ion	POTASSIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	CF3	1	Ligand/Ion	9,9,9-TRIFLUORO-8-OXO-N-PHENYLNONANAMIDE
2	K	-1	Ligand/Ion	POTASSIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	CF3	1	Ligand/Ion	9,9,9-TRIFLUORO-8-OXO-N-PHENYLNONANAMIDE
2	K	-1	Ligand/Ion	POTASSIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (1, 4)

No.	Name	Count	Type	Full Name
1	CF3	4	Ligand/Ion	9,9,9-TRIFLUORO-8-OXO-N-PHENYLNONANAMIDE
2	K	-1	Ligand/Ion	POTASSIUM ION
3	ZN	-1	Ligand/Ion	ZINC ION

Sites (16, 16)

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:180 , HIS A:182 , ASP A:268 , CF3 A:9452	BINDING SITE FOR RESIDUE ZN A 9451
02	AC2	SOFTWARE	ASP B:180 , HIS B:182 , ASP B:268 , CF3 B:9552	BINDING SITE FOR RESIDUE ZN B 9551
03	AC3	SOFTWARE	ASP C:180 , HIS C:182 , ASP C:268 , CF3 C:9652	BINDING SITE FOR RESIDUE ZN C 9651
04	AC4	SOFTWARE	ASP D:180 , HIS D:182 , ASP D:268 , CF3 D:9752	BINDING SITE FOR RESIDUE ZN D 9751
05	AC5	SOFTWARE	ASP A:178 , ASP A:180 , HIS A:182 , SER A:201 , LEU A:202	BINDING SITE FOR RESIDUE K A 9450
06	AC6	SOFTWARE	ASP B:178 , ASP B:180 , HIS B:182 , SER B:201 , LEU B:202	BINDING SITE FOR RESIDUE K B 9550
07	AC7	SOFTWARE	ASP C:178 , ASP C:180 , HIS C:182 , SER C:201 , LEU C:202	BINDING SITE FOR RESIDUE K C 9650
08	AC8	SOFTWARE	ASP D:178 , ASP D:180 , HIS D:182 , SER D:201 , LEU D:202	BINDING SITE FOR RESIDUE K D 9750
09	AC9	SOFTWARE	TRP A:191 , ASP A:194 , VAL A:197 , TYR A:226 , HOH A:9476 , HOH A:9574	BINDING SITE FOR RESIDUE K A 9449
10	BC1	SOFTWARE	TRP B:191 , ASP B:194 , VAL B:197 , TYR B:226 , HOH B:9643 , HOH B:9759	BINDING SITE FOR RESIDUE K B 9549
11	BC2	SOFTWARE	TRP C:191 , ASP C:194 , VAL C:197 , TYR C:226 , HOH C:9715 , HOH C:9724	BINDING SITE FOR RESIDUE K C 9649
12	BC3	SOFTWARE	TRP D:191 , ASP D:194 , VAL D:197 , TYR D:226 , HOH D:9849	BINDING SITE FOR RESIDUE K D 9749
13	BC4	SOFTWARE	LEU A:21 , ILE A:100 , PRO A:140 , HIS A:142 , HIS A:143 , GLY A:151 , PHE A:152 , CYS A:153 , ASP A:180 , HIS A:182 , PHE A:208 , ASP A:268 , GLU A:309 , GLY A:310 , TYR A:312 , ZN A:9451 , HOH A:9535 , PHE B:341	BINDING SITE FOR RESIDUE CF3 A 9452
14	BC5	SOFTWARE	PHE A:341 , LEU B:21 , ILE B:100 , PRO B:140 , HIS B:142 , HIS B:143 , GLY B:151 , PHE B:152 , CYS B:153 , ASP B:180 , HIS B:182 , PHE B:208 , ASP B:268 , GLU B:309 , GLY B:310 , TYR B:312 , ZN B:9551 , HOH B:9570	BINDING SITE FOR RESIDUE CF3 B 9552
15	BC6	SOFTWARE	LEU C:21 , ILE C:100 , PRO C:140 , HIS C:142 , HIS C:143 , GLY C:151 , PHE C:152 , CYS C:153 , ASP C:180 , HIS C:182 , PHE C:208 , ASP C:268 , GLU C:309 , GLY C:310 , TYR C:312 , ZN C:9651 , HOH C:9677 , HOH C:9820 , PHE D:341	BINDING SITE FOR RESIDUE CF3 C 9652
16	BC7	SOFTWARE	PHE C:341 , LEU D:21 , ILE D:100 , PRO D:140 , HIS D:142 , HIS D:143 , GLY D:151 , PHE D:152 , CYS D:153 , ASP D:180 , HIS D:182 , PHE D:208 , ASP D:268 , GLU D:309 , GLY D:310 , TYR D:312 , ZN D:9751 , HOH D:9785 , HOH D:9828	BINDING SITE FOR RESIDUE CF3 D 9752

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

Asymmetric Unit

No.	Residues
1	Asn A:138	-	Pro A:139
2	Phe A:208	-	Pro A:209
3	Asn B:138	-	Pro B:139
4	Phe B:208	-	Pro B:209
5	Asn C:138	-	Pro C:139
6	Phe C:208	-	Pro C:209
7	Asn D:138	-	Pro D:139
8	Phe D:208	-	Pro D:209

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:367
 aligned with HDAH_ALCSD | Q70I53 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:367
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       
           HDAH_ALCSD     2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLHALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADI 368
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhh..........................hhhhhhhhhhhhhhhhhhhhee......hhhhhhh..hhhhhhhhhhhhh....ee......ee...hhhhhhhhhhhhhhhhhhhhh....eeee....................hhhhhhhhhhhhh.....eeeee.....hhhhhhhh.....eeeeeeee...............hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhh.......hhhhhhh......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gh6 A   2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADI 368
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361

Chain B from PDB  Type:PROTEIN  Length:367
 aligned with HDAH_ALCSD | Q70I53 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:367
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       
           HDAH_ALCSD     2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLHALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADI 368
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhh..........................hhhhhhhhhhhhhhhhhhhhee......hhhhhhh..hhhhhhhhhhhhhh...ee......ee...hhhhhhhhhhhhhhhhhhhhh....eeee....................hhhhhhhhhhhhh.....eeeee.....hhhhhhhhh....eeeeeeee...............hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhh.......hhhhhhh......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gh6 B   2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADI 368
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361

Chain C from PDB  Type:PROTEIN  Length:367
 aligned with HDAH_ALCSD | Q70I53 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:367
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       
           HDAH_ALCSD     2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLHALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADI 368
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhh..........................hhhhhhhhhhhhhhhhhhhhee......hhhhhh...hhhhhhhhhhhhh....ee......ee...hhhhhhhhhhhhhhhhhhhhhh...eeee....................hhhhhhhhhhhhh.....eeeee.....hhhhhhhh.....eeeeeeee...............hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhhhh.......hhhhhhh......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gh6 C   2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADI 368
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361

Chain D from PDB  Type:PROTEIN  Length:367
 aligned with HDAH_ALCSD | Q70I53 from UniProtKB/Swiss-Prot  Length:369

    Alignment length:367
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       
           HDAH_ALCSD     2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLHALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADI 368
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhh.........................hhhhhhhhhhhhhhhhhhhhee......hhhhhhh..hhhhhhhhhhhhhh...ee......ee...hhhhhhhhhhhhhhhhhhhhh....eeee....................hhhhhhhhhhhhh.....eeeee.....hhhhhhhh.....eeeeeeee...............hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhhhh.......hhhhhhh......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gh6 D   2 AIGYVWNTLYGWVDTGTGSLAAANLTARMQPISHHLAHPDTKRRFHELVCASGQIEHLTPIAAVAATDADILRAHSAAHLENMKRVSNLPTGGDTGDGITMMGNGGLEIARLSAGGAVELTRRVATGELSAGYALVNPPGHHAPHNAAMGFCIFNNTSVAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARMMVTADGFRQMARRTIDCAADICDGRIVFVQEGGYSPHYLPFCGLAVIEELTGVRSLPDPYHEFLAGMGGNTLLDAERAAIEEIVPLLADI 368
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 1)

Visualization

Interactive Views

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CF3	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		K	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		ZN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Asn A:138 - Pro A:139	[ RasMol ]
		Asn B:138 - Pro B:139	[ RasMol ]
		Asn C:138 - Pro C:139	[ RasMol ]
		Asn D:138 - Pro D:139	[ RasMol ]
		Phe A:208 - Pro A:209	[ RasMol ]
		Phe B:208 - Pro B:209	[ RasMol ]
		Phe C:208 - Pro C:209	[ RasMol ]
		Phe D:208 - Pro D:209	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]
		Biological Unit 5	[ Jena3D ]

Still Images

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format \| Biol. Unit 3 PNG format \| Biol. Unit 4 PNG format \| Biol. Unit 5 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Databases and Analysis Tools

Databases

Access by PDB/NDB ID
	2gh6
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	HDAH_ALCSD \| Q70I53
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	3.5.1.-
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Analysis Tools

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	HDAH_ALCSD \| Q70I53
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

Description