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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF A HDAC-LIKE PROTEIN WITH 9,9,9-TRIFLUOR PHENYLNONAN AMIDE BOUND
Keywords HISTONE DEACETYLASE, ZINC-ION, TRIFLUOROMETHYL KETONE, HYDRO
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   2GH6     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE  A 367 2747 0
2  Protein   HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE  B 367 2747 0
3  Protein   HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE  C 367 2747 0
4  Protein   HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE  D 367 2747 0
5  Ligand   HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE  A 4 0 24
6  Ligand   HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE  B 4 0 24
7  Ligand   HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE  C 4 0 24
8  Ligand   HISTONE DEACETYLASE-LIKE AMIDOHYDROLASE  D 4 0 24
9 Water     783 0 783
total       2267 10988 879
Proteins
Unit 1 ALA2 ILE3 GLY4 TYR5 VAL6 TRP7 ASN8 THR9 LEU10 TYR11 GLY12 TRP13 VAL14 ASP15 THR16 GLY17 THR18 GLY19 SER20 LEU21 ALA22 ALA23 ALA24 ASN25 LEU26 THR27 ALA28 ARG29 MET30 GLN31 PRO32 ILE33 SER34 HIS35 HIS36 LEU37 ALA38 HIS39 PRO40 ASP41 THR42 LYS43 ARG44 ARG45 PHE46 HIS47 GLU48 LEU49 VAL50 CYS51 ALA52 SER53 GLY54 GLN55 ILE56 GLU57 HIS58 LEU59 THR60 PRO61 ILE62 ALA63 ALA64 VAL65 ALA66 ALA67 THR68 ASP69 ALA70 ASP71 ILE72 LEU73 ARG74 ALA75 HIS76 SER77 ALA78 ALA79 HIS80 LEU81 GLU82 ASN83 MET84 LYS85 ARG86 VAL87 SER88 ASN89 LEU90 PRO91 THR92 GLY93 GLY94 ASP95 THR96 GLY97 ASP98 GLY99 ILE100 THR101 MET102 MET103 GLY104 ASN105 GLY106 GLY107 LEU108 GLU109 ILE110 ALA111 ARG112 LEU113 SER114 ALA115 GLY116 GLY117 ALA118 VAL119 GLU120 LEU121 THR122 ARG123 ARG124 VAL125 ALA126 THR127 GLY128 GLU129 LEU130 SER131 ALA132 GLY133 TYR134 ALA135 LEU136 VAL137 ASN138 PRO139 PRO140 GLY141 HIS142 HIS143 ALA144 PRO145 HIS146 ASN147 ALA148 ALA149 MET150 GLY151 PHE152 CYS153 ILE154 PHE155 ASN156 ASN157 THR158 SER159 VAL160 ALA161 ALA162 GLY163 TYR164 ALA165 ARG166 ALA167 VAL168 LEU169 GLY170 MET171 GLU172 ARG173 VAL174 ALA175 ILE176 LEU177 ASP178 TRP179 ASP180 VAL181 HIS182 HIS183 GLY184 ASN185 GLY186 THR187 GLN188 ASP189 ILE190 TRP191 TRP192 ASN193 ASP194 PRO195 SER196 VAL197 LEU198 THR199 ILE200 SER201 LEU202 HIS203 GLN204 HIS205 LEU206 CYS207 PHE208 PRO209 PRO210 ASP211 SER212 GLY213 TYR214 SER215 THR216 GLU217 ARG218 GLY219 ALA220 GLY221 ASN222 GLY223 HIS224 GLY225 TYR226 ASN227 ILE228 ASN229 VAL230 PRO231 LEU232 PRO233 PRO234 GLY235 SER236 GLY237 ASN238 ALA239 ALA240 TYR241 LEU242 HIS243 ALA244 MET245 ASP246 GLN247 VAL248 VAL249 LEU250 PRO251 ALA252 LEU253 ARG254 ALA255 TYR256 ARG257 PRO258 GLN259 LEU260 ILE261 ILE262 VAL263 GLY264 SER265 GLY266 PHE267 ASP268 ALA269 SER270 MET271 LEU272 ASP273 PRO274 LEU275 ALA276 ARG277 MET278 MET279 VAL280 THR281 ALA282 ASP283 GLY284 PHE285 ARG286 GLN287 MET288 ALA289 ARG290 ARG291 THR292 ILE293 ASP294 CYS295 ALA296 ALA297 ASP298 ILE299 CYS300 ASP301 GLY302 ARG303 ILE304 VAL305 PHE306 VAL307 GLN308 GLU309 GLY310 GLY311 TYR312 SER313 PRO314 HIS315 TYR316 LEU317 PRO318 PHE319 CYS320 GLY321 LEU322 ALA323 VAL324 ILE325 GLU326 GLU327 LEU328 THR329 GLY330 VAL331 ARG332 SER333 LEU334 PRO335 ASP336 PRO337 TYR338 HIS339 GLU340 PHE341 LEU342 ALA343 GLY344 MET345 GLY346 GLY347 ASN348 THR349 LEU350 LEU351 ASP352 ALA353 GLU354 ARG355 ALA356 ALA357 ILE358 GLU359 GLU360 ILE361 VAL362 PRO363 LEU364 LEU365 ALA366 ASP367 ILE368
Unit 2 ALA2 ILE3 GLY4 TYR5 VAL6 TRP7 ASN8 THR9 LEU10 TYR11 GLY12 TRP13 VAL14 ASP15 THR16 GLY17 THR18 GLY19 SER20 LEU21 ALA22 ALA23 ALA24 ASN25 LEU26 THR27 ALA28 ARG29 MET30 GLN31 PRO32 ILE33 SER34 HIS35 HIS36 LEU37 ALA38 HIS39 PRO40 ASP41 THR42 LYS43 ARG44 ARG45 PHE46 HIS47 GLU48 LEU49 VAL50 CYS51 ALA52 SER53 GLY54 GLN55 ILE56 GLU57 HIS58 LEU59 THR60 PRO61 ILE62 ALA63 ALA64 VAL65 ALA66 ALA67 THR68 ASP69 ALA70 ASP71 ILE72 LEU73 ARG74 ALA75 HIS76 SER77 ALA78 ALA79 HIS80 LEU81 GLU82 ASN83 MET84 LYS85 ARG86 VAL87 SER88 ASN89 LEU90 PRO91 THR92 GLY93 GLY94 ASP95 THR96 GLY97 ASP98 GLY99 ILE100 THR101 MET102 MET103 GLY104 ASN105 GLY106 GLY107 LEU108 GLU109 ILE110 ALA111 ARG112 LEU113 SER114 ALA115 GLY116 GLY117 ALA118 VAL119 GLU120 LEU121 THR122 ARG123 ARG124 VAL125 ALA126 THR127 GLY128 GLU129 LEU130 SER131 ALA132 GLY133 TYR134 ALA135 LEU136 VAL137 ASN138 PRO139 PRO140 GLY141 HIS142 HIS143 ALA144 PRO145 HIS146 ASN147 ALA148 ALA149 MET150 GLY151 PHE152 CYS153 ILE154 PHE155 ASN156 ASN157 THR158 SER159 VAL160 ALA161 ALA162 GLY163 TYR164 ALA165 ARG166 ALA167 VAL168 LEU169 GLY170 MET171 GLU172 ARG173 VAL174 ALA175 ILE176 LEU177 ASP178 TRP179 ASP180 VAL181 HIS182 HIS183 GLY184 ASN185 GLY186 THR187 GLN188 ASP189 ILE190 TRP191 TRP192 ASN193 ASP194 PRO195 SER196 VAL197 LEU198 THR199 ILE200 SER201 LEU202 HIS203 GLN204 HIS205 LEU206 CYS207 PHE208 PRO209 PRO210 ASP211 SER212 GLY213 TYR214 SER215 THR216 GLU217 ARG218 GLY219 ALA220 GLY221 ASN222 GLY223 HIS224 GLY225 TYR226 ASN227 ILE228 ASN229 VAL230 PRO231 LEU232 PRO233 PRO234 GLY235 SER236 GLY237 ASN238 ALA239 ALA240 TYR241 LEU242 HIS243 ALA244 MET245 ASP246 GLN247 VAL248 VAL249 LEU250 PRO251 ALA252 LEU253 ARG254 ALA255 TYR256 ARG257 PRO258 GLN259 LEU260 ILE261 ILE262 VAL263 GLY264 SER265 GLY266 PHE267 ASP268 ALA269 SER270 MET271 LEU272 ASP273 PRO274 LEU275 ALA276 ARG277 MET278 MET279 VAL280 THR281 ALA282 ASP283 GLY284 PHE285 ARG286 GLN287 MET288 ALA289 ARG290 ARG291 THR292 ILE293 ASP294 CYS295 ALA296 ALA297 ASP298 ILE299 CYS300 ASP301 GLY302 ARG303 ILE304 VAL305 PHE306 VAL307 GLN308 GLU309 GLY310 GLY311 TYR312 SER313 PRO314 HIS315 TYR316 LEU317 PRO318 PHE319 CYS320 GLY321 LEU322 ALA323 VAL324 ILE325 GLU326 GLU327 LEU328 THR329 GLY330 VAL331 ARG332 SER333 LEU334 PRO335 ASP336 PRO337 TYR338 HIS339 GLU340 PHE341 LEU342 ALA343 GLY344 MET345 GLY346 GLY347 ASN348 THR349 LEU350 LEU351 ASP352 ALA353 GLU354 ARG355 ALA356 ALA357 ILE358 GLU359 GLU360 ILE361 VAL362 PRO363 LEU364 LEU365 ALA366 ASP367 ILE368
Unit 3 ALA2 ILE3 GLY4 TYR5 VAL6 TRP7 ASN8 THR9 LEU10 TYR11 GLY12 TRP13 VAL14 ASP15 THR16 GLY17 THR18 GLY19 SER20 LEU21 ALA22 ALA23 ALA24 ASN25 LEU26 THR27 ALA28 ARG29 MET30 GLN31 PRO32 ILE33 SER34 HIS35 HIS36 LEU37 ALA38 HIS39 PRO40 ASP41 THR42 LYS43 ARG44 ARG45 PHE46 HIS47 GLU48 LEU49 VAL50 CYS51 ALA52 SER53 GLY54 GLN55 ILE56 GLU57 HIS58 LEU59 THR60 PRO61 ILE62 ALA63 ALA64 VAL65 ALA66 ALA67 THR68 ASP69 ALA70 ASP71 ILE72 LEU73 ARG74 ALA75 HIS76 SER77 ALA78 ALA79 HIS80 LEU81 GLU82 ASN83 MET84 LYS85 ARG86 VAL87 SER88 ASN89 LEU90 PRO91 THR92 GLY93 GLY94 ASP95 THR96 GLY97 ASP98 GLY99 ILE100 THR101 MET102 MET103 GLY104 ASN105 GLY106 GLY107 LEU108 GLU109 ILE110 ALA111 ARG112 LEU113 SER114 ALA115 GLY116 GLY117 ALA118 VAL119 GLU120 LEU121 THR122 ARG123 ARG124 VAL125 ALA126 THR127 GLY128 GLU129 LEU130 SER131 ALA132 GLY133 TYR134 ALA135 LEU136 VAL137 ASN138 PRO139 PRO140 GLY141 HIS142 HIS143 ALA144 PRO145 HIS146 ASN147 ALA148 ALA149 MET150 GLY151 PHE152 CYS153 ILE154 PHE155 ASN156 ASN157 THR158 SER159 VAL160 ALA161 ALA162 GLY163 TYR164 ALA165 ARG166 ALA167 VAL168 LEU169 GLY170 MET171 GLU172 ARG173 VAL174 ALA175 ILE176 LEU177 ASP178 TRP179 ASP180 VAL181 HIS182 HIS183 GLY184 ASN185 GLY186 THR187 GLN188 ASP189 ILE190 TRP191 TRP192 ASN193 ASP194 PRO195 SER196 VAL197 LEU198 THR199 ILE200 SER201 LEU202 HIS203 GLN204 HIS205 LEU206 CYS207 PHE208 PRO209 PRO210 ASP211 SER212 GLY213 TYR214 SER215 THR216 GLU217 ARG218 GLY219 ALA220 GLY221 ASN222 GLY223 HIS224 GLY225 TYR226 ASN227 ILE228 ASN229 VAL230 PRO231 LEU232 PRO233 PRO234 GLY235 SER236 GLY237 ASN238 ALA239 ALA240 TYR241 LEU242 HIS243 ALA244 MET245 ASP246 GLN247 VAL248 VAL249 LEU250 PRO251 ALA252 LEU253 ARG254 ALA255 TYR256 ARG257 PRO258 GLN259 LEU260 ILE261 ILE262 VAL263 GLY264 SER265 GLY266 PHE267 ASP268 ALA269 SER270 MET271 LEU272 ASP273 PRO274 LEU275 ALA276 ARG277 MET278 MET279 VAL280 THR281 ALA282 ASP283 GLY284 PHE285 ARG286 GLN287 MET288 ALA289 ARG290 ARG291 THR292 ILE293 ASP294 CYS295 ALA296 ALA297 ASP298 ILE299 CYS300 ASP301 GLY302 ARG303 ILE304 VAL305 PHE306 VAL307 GLN308 GLU309 GLY310 GLY311 TYR312 SER313 PRO314 HIS315 TYR316 LEU317 PRO318 PHE319 CYS320 GLY321 LEU322 ALA323 VAL324 ILE325 GLU326 GLU327 LEU328 THR329 GLY330 VAL331 ARG332 SER333 LEU334 PRO335 ASP336 PRO337 TYR338 HIS339 GLU340 PHE341 LEU342 ALA343 GLY344 MET345 GLY346 GLY347 ASN348 THR349 LEU350 LEU351 ASP352 ALA353 GLU354 ARG355 ALA356 ALA357 ILE358 GLU359 GLU360 ILE361 VAL362 PRO363 LEU364 LEU365 ALA366 ASP367 ILE368
Unit 4 ALA2 ILE3 GLY4 TYR5 VAL6 TRP7 ASN8 THR9 LEU10 TYR11 GLY12 TRP13 VAL14 ASP15 THR16 GLY17 THR18 GLY19 SER20 LEU21 ALA22 ALA23 ALA24 ASN25 LEU26 THR27 ALA28 ARG29 MET30 GLN31 PRO32 ILE33 SER34 HIS35 HIS36 LEU37 ALA38 HIS39 PRO40 ASP41 THR42 LYS43 ARG44 ARG45 PHE46 HIS47 GLU48 LEU49 VAL50 CYS51 ALA52 SER53 GLY54 GLN55 ILE56 GLU57 HIS58 LEU59 THR60 PRO61 ILE62 ALA63 ALA64 VAL65 ALA66 ALA67 THR68 ASP69 ALA70 ASP71 ILE72 LEU73 ARG74 ALA75 HIS76 SER77 ALA78 ALA79 HIS80 LEU81 GLU82 ASN83 MET84 LYS85 ARG86 VAL87 SER88 ASN89 LEU90 PRO91 THR92 GLY93 GLY94 ASP95 THR96 GLY97 ASP98 GLY99 ILE100 THR101 MET102 MET103 GLY104 ASN105 GLY106 GLY107 LEU108 GLU109 ILE110 ALA111 ARG112 LEU113 SER114 ALA115 GLY116 GLY117 ALA118 VAL119 GLU120 LEU121 THR122 ARG123 ARG124 VAL125 ALA126 THR127 GLY128 GLU129 LEU130 SER131 ALA132 GLY133 TYR134 ALA135 LEU136 VAL137 ASN138 PRO139 PRO140 GLY141 HIS142 HIS143 ALA144 PRO145 HIS146 ASN147 ALA148 ALA149 MET150 GLY151 PHE152 CYS153 ILE154 PHE155 ASN156 ASN157 THR158 SER159 VAL160 ALA161 ALA162 GLY163 TYR164 ALA165 ARG166 ALA167 VAL168 LEU169 GLY170 MET171 GLU172 ARG173 VAL174 ALA175 ILE176 LEU177 ASP178 TRP179 ASP180 VAL181 HIS182 HIS183 GLY184 ASN185 GLY186 THR187 GLN188 ASP189 ILE190 TRP191 TRP192 ASN193 ASP194 PRO195 SER196 VAL197 LEU198 THR199 ILE200 SER201 LEU202 HIS203 GLN204 HIS205 LEU206 CYS207 PHE208 PRO209 PRO210 ASP211 SER212 GLY213 TYR214 SER215 THR216 GLU217 ARG218 GLY219 ALA220 GLY221 ASN222 GLY223 HIS224 GLY225 TYR226 ASN227 ILE228 ASN229 VAL230 PRO231 LEU232 PRO233 PRO234 GLY235 SER236 GLY237 ASN238 ALA239 ALA240 TYR241 LEU242 HIS243 ALA244 MET245 ASP246 GLN247 VAL248 VAL249 LEU250 PRO251 ALA252 LEU253 ARG254 ALA255 TYR256 ARG257 PRO258 GLN259 LEU260 ILE261 ILE262 VAL263 GLY264 SER265 GLY266 PHE267 ASP268 ALA269 SER270 MET271 LEU272 ASP273 PRO274 LEU275 ALA276 ARG277 MET278 MET279 VAL280 THR281 ALA282 ASP283 GLY284 PHE285 ARG286 GLN287 MET288 ALA289 ARG290 ARG291 THR292 ILE293 ASP294 CYS295 ALA296 ALA297 ASP298 ILE299 CYS300 ASP301 GLY302 ARG303 ILE304 VAL305 PHE306 VAL307 GLN308 GLU309 GLY310 GLY311 TYR312 SER313 PRO314 HIS315 TYR316 LEU317 PRO318 PHE319 CYS320 GLY321 LEU322 ALA323 VAL324 ILE325 GLU326 GLU327 LEU328 THR329 GLY330 VAL331 ARG332 SER333 LEU334 PRO335 ASP336 PRO337 TYR338 HIS339 GLU340 PHE341 LEU342 ALA343 GLY344 MET345 GLY346 GLY347 ASN348 THR349 LEU350 LEU351 ASP352 ALA353 GLU354 ARG355 ALA356 ALA357 ILE358 GLU359 GLU360 ILE361 VAL362 PRO363 LEU364 LEU365 ALA366 ASP367 ILE368
Ligands
Unit 5 K9449 K9450 ZN9451 CF39452
Unit 6 K9549 K9550 ZN9551 CF39552
Unit 7 K9649 K9650 ZN9651 CF39652
Unit 8 K9749 K9750 ZN9751 CF39752
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany