2G7M - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF B. FRAGILIS N-SUCCINYLORNITHINE TRANSCARBAMYLASE P90E MUTANT COMPLEXED WITH CARBAMOYL PHOSPHATE AND N-ACETYLNORVALINE

Authors :   D. Shi, X. Yu, L. Roth, H. Morizono, N. M. Allewell, M. Tuchman

Date :   28 Feb 06 (Deposition) - 06 Mar 07 (Release) - 09 Dec 08 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.90

Chains :   Asym. Unit : C,D,E,X,Y,Z
Biol. Unit 1: X,Y,Z  (1x)
Biol. Unit 2: C,D,E  (1x)

Keywords :   Alpha/Beta, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Shi, X. Yu, J. Cabrera-Luque, T. Y. Chen, L. Roth, H. Morizono, N. M. Allewell, M. Tuchman
A Single Mutation In The Active Site Swaps The Substrate Specificity Of N-Acetyl-L-Ornithine Transcarbamylase And N-Succinyl-L-Ornithine Transcarbamylase.
Protein Sci. V. 16 1689 2007
PubMed-ID: 17600144 | Reference-DOI: 10.1110/PS.072919907
(for further references see the PDB file header)

Molecule 1 - PUTATIVE ORNITHINE CARBAMOYLTRANSFERASE
	Chains	:	X, Y, Z, C, D, E
	EC Number	:	2.1.3.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	ARGF'
	Mutation	:	YES
	Organism Scientific	:	BACTEROIDES FRAGILIS
	Organism Taxid	:	817

		1	2	3	4	5	6
Asymmetric Unit	:	C	D	E	X	Y	Z
Biological Unit 1 (1x)	:				X	Y	Z
Biological Unit 2 (1x)	:	C	D	E

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 14)

No.	Name	Count	Type	Full Name
1	AN0	6	Ligand/Ion	N-ACETYL-L-NORVALINE
2	CP	6	Ligand/Ion	PHOSPHORIC ACID MONO(FORMAMIDE)ESTER
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	AN0	3	Ligand/Ion	N-ACETYL-L-NORVALINE
2	CP	-1	Ligand/Ion	PHOSPHORIC ACID MONO(FORMAMIDE)ESTER
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	AN0	3	Ligand/Ion	N-ACETYL-L-NORVALINE
2	CP	-1	Ligand/Ion	PHOSPHORIC ACID MONO(FORMAMIDE)ESTER
3	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG X:35 , ARG Y:35 , ARG Z:35	BINDING SITE FOR RESIDUE SO4 Y 355
02	AC2	SOFTWARE	ARG C:35 , ARG D:35 , ARG E:35	BINDING SITE FOR RESIDUE SO4 D 356
03	AC3	SOFTWARE	PHE X:112 , GLU X:142 , ARG X:178 , LEU X:180 , LYS X:236 , LEU X:275 , CP X:346 , TRP Z:75 , GLU Z:90	BINDING SITE FOR RESIDUE AN0 X 345
04	AC4	SOFTWARE	SER X:47 , LEU X:48 , ARG X:49 , THR X:50 , ARG X:110 , HIS X:147 , GLN X:150 , CYS X:274 , LEU X:275 , ARG X:302 , AN0 X:345 , TRP Z:75	BINDING SITE FOR RESIDUE CP X 346
05	AC5	SOFTWARE	TRP X:75 , GLU X:90 , PHE Y:112 , GLU Y:142 , ARG Y:178 , LEU Y:180 , PRO Y:181 , LYS Y:236 , CP Y:446 , HOH Y:488	BINDING SITE FOR RESIDUE AN0 Y 445
06	AC6	SOFTWARE	TRP X:75 , SER Y:47 , LEU Y:48 , ARG Y:49 , THR Y:50 , ARG Y:110 , HIS Y:147 , GLN Y:150 , CYS Y:274 , LEU Y:275 , ARG Y:302 , AN0 Y:445	BINDING SITE FOR RESIDUE CP Y 446
07	AC7	SOFTWARE	TRP Y:75 , GLU Y:90 , PHE Z:112 , GLU Z:142 , LEU Z:180 , PRO Z:181 , LYS Z:236 , CP Z:546	BINDING SITE FOR RESIDUE AN0 Z 545
08	AC8	SOFTWARE	TRP Y:75 , SER Z:47 , LEU Z:48 , ARG Z:49 , THR Z:50 , ARG Z:110 , HIS Z:147 , GLN Z:150 , CYS Z:274 , LEU Z:275 , ARG Z:302 , AN0 Z:545	BINDING SITE FOR RESIDUE CP Z 546
09	AC9	SOFTWARE	ARG C:110 , PHE C:112 , GLU C:142 , PRO C:181 , LYS C:236 , CP C:646 , TRP E:75 , GLU E:90	BINDING SITE FOR RESIDUE AN0 C 645
10	BC1	SOFTWARE	SER C:47 , LEU C:48 , ARG C:49 , THR C:50 , ARG C:110 , HIS C:147 , GLN C:150 , CYS C:274 , LEU C:275 , ARG C:302 , AN0 C:645 , TRP E:75	BINDING SITE FOR RESIDUE CP C 646
11	BC2	SOFTWARE	TRP C:75 , GLU C:90 , GLU D:142 , ARG D:178 , VAL D:184 , LYS D:236 , CP D:746	BINDING SITE FOR RESIDUE AN0 D 745
12	BC3	SOFTWARE	TRP C:75 , SER D:47 , LEU D:48 , ARG D:49 , THR D:50 , ARG D:110 , HIS D:147 , GLN D:150 , CYS D:274 , LEU D:275 , ARG D:302 , AN0 D:745	BINDING SITE FOR RESIDUE CP D 746
13	BC4	SOFTWARE	TRP D:75 , GLU D:90 , PHE E:112 , GLU E:142 , PRO E:181 , LYS E:236 , CP E:846	BINDING SITE FOR RESIDUE AN0 E 845
14	BC5	SOFTWARE	TRP D:75 , SER E:47 , LEU E:48 , ARG E:49 , THR E:50 , ARG E:110 , HIS E:147 , GLN E:150 , CYS E:274 , LEU E:275 , ARG E:302 , AN0 E:845	BINDING SITE FOR RESIDUE CP E 846

(no "SS Bond" information available for 2G7M)

Asymmetric Unit

No.	Residues
1	Leu X:275	-	Pro X:276
2	Leu Y:275	-	Pro Y:276
3	Leu Z:275	-	Pro Z:276
4	Leu C:275	-	Pro C:276
5	Leu D:275	-	Pro D:276
6	Leu E:275	-	Pro E:276

(no "SAP(SNP)/Variant" information available for 2G7M)

(no "PROSITE Motif" information available for 2G7M)

(no "Exon" information available for 2G7M)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain C from PDB  Type:PROTEIN  Length:320
 aligned with Q64Z33_BACFR | Q64Z33 from UniProtKB/TrEMBL  Length:318

    Alignment length:320
                              1                                                                                                                                                                                                                                                                                                                             
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
         Q64Z33_BACFR     - --MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFESREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDLKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2g7mc1 C:-1-163 Transcarbamylase-like protein                                                                                                                       d2g7mc2 C:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2g7mC01 C:-1-147,C:302-318  [code=3.40.50.1370, no name defined]                                                                                     --2g7mC02 C:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2g7mC01           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeee........ee............eehhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhh...eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7m C  -1 SHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKEEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318

Chain D from PDB  Type:PROTEIN  Length:320
 aligned with Q64Z33_BACFR | Q64Z33 from UniProtKB/TrEMBL  Length:318

    Alignment length:320
                              1                                                                                                                                                                                                                                                                                                                             
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
         Q64Z33_BACFR     - --MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFESREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDLKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2g7md1 D:-1-163 Transcarbamylase-like protein                                                                                                                       d2g7md2 D:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2g7mD01 D:-1-147,D:302-318  [code=3.40.50.1370, no name defined]                                                                                     --2g7mD02 D:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2g7mD01           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeee........ee............eehhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhh....eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7m D  -1 SHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKEEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318

Chain E from PDB  Type:PROTEIN  Length:320
 aligned with Q64Z33_BACFR | Q64Z33 from UniProtKB/TrEMBL  Length:318

    Alignment length:320
                              1                                                                                                                                                                                                                                                                                                                             
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
         Q64Z33_BACFR     - --MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFESREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDLKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2g7me1 E:-1-163 Transcarbamylase-like protein                                                                                                                       d2g7me2 E:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2g7mE01 E:-1-147,E:302-318  [code=3.40.50.1370, no name defined]                                                                                     --2g7mE02 E:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2g7mE01           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeee........ee............eehhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhh...eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7m E  -1 SHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKEEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318

Chain X from PDB  Type:PROTEIN  Length:321
 aligned with Q64Z33_BACFR | Q64Z33 from UniProtKB/TrEMBL  Length:318

    Alignment length:321
                               1                                                                                                                                                                                                                                                                                                                             
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317 
         Q64Z33_BACFR     - ---MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFESREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDLKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2g7mx1 X:-2-163 Transcarbamylase-like protein                                                                                                                        d2g7mx2 X:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2g7mX01 X:-2-147,X:302-318  [code=3.40.50.1370, no name defined]                                                                                      --2g7mX02 X:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2g7mX01           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeee........ee............eehhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhh....eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7m X  -2 GSHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKEEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317

Chain Y from PDB  Type:PROTEIN  Length:321
 aligned with Q64Z33_BACFR | Q64Z33 from UniProtKB/TrEMBL  Length:318

    Alignment length:321
                               1                                                                                                                                                                                                                                                                                                                             
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317 
         Q64Z33_BACFR     - ---MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFESREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDLKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2g7my1 Y:-2-163 Transcarbamylase-like protein                                                                                                                        d2g7my2 Y:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2g7mY01 Y:-2-147,Y:302-318  [code=3.40.50.1370, no name defined]                                                                                      --2g7mY02 Y:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2g7mY01           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeee........ee............eehhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhh....eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7m Y  -2 GSHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKEEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317

Chain Z from PDB  Type:PROTEIN  Length:320
 aligned with Q64Z33_BACFR | Q64Z33 from UniProtKB/TrEMBL  Length:318

    Alignment length:320
                              1                                                                                                                                                                                                                                                                                                                             
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
         Q64Z33_BACFR     - --MKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARFESREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDLKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
               SCOP domains d2g7mz1 Z:-1-163 Transcarbamylase-like protein                                                                                                                       d2g7mz2 Z:164-318 Transcarbamylase-like protein                                                                                                             SCOP domains
               CATH domains 2g7mZ01 Z:-1-147,Z:302-318  [code=3.40.50.1370, no name defined]                                                                                     --2g7mZ02 Z:150-301  [code=3.40.50.1370, no name defined]                                                                                                 2g7mZ01           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhhhhhhhhhhhhhhhhhhh...........eeeeee....hhhhhhhhhhhhhh..eeeee........ee............eehhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhh...eee......hhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhh....eeeee.......hhhhhh..eee.hhhhhhh...eeee......hhhhh......hhhhh.hhhhhhh....eee...........hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g7m Z  -1 SHMKKFTCVQDIGDLKSALAESFEIKKDRFKYVELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAWKLETERGVIMDGDKEEHLLEAIPVMGCYCDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYLGDNYGQILSTDRNWTVGDRQMAVTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLLENLP 318
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: ATC-like (129)

Superfamily: Aspartate/ornithine carbamoyltransferase (122)

Family: Aspartate/ornithine carbamoyltransferase (87)

Protein domain: Transcarbamylase-like protein (4)

Bacteroides fragilis [TaxId: 817] (4)

1a	d2g7mc1	C:-1-163
1b	d2g7mc2	C:164-318
1c	d2g7md1	D:-1-163
1d	d2g7md2	D:164-318
1e	d2g7me1	E:-1-163
1f	d2g7me2	E:164-318
1g	d2g7mx1	X:-2-163
1h	d2g7mx2	X:164-318
1i	d2g7my1	Y:-2-163
1j	d2g7my2	Y:164-318
1k	d2g7mz1	Z:-1-163
1l	d2g7mz2	Z:164-318

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1370, no name defined] (91)

Bacteroides fragilis. Organism_taxid: 817. (1)

1a	2g7mC02	C:150-301
1b	2g7mD02	D:150-301
1c	2g7mX01	X:-2-147,X:302-318
1d	2g7mY01	Y:-2-147,Y:302-318
1e	2g7mE02	E:150-301
1f	2g7mX02	X:150-301
1g	2g7mY02	Y:150-301
1h	2g7mZ02	Z:150-301
1i	2g7mC01	C:-1-147,C:302-318
1j	2g7mD01	D:-1-147,D:302-318
1k	2g7mE01	E:-1-147,E:302-318
1l	2g7mZ01	Z:-1-147,Z:302-318

(no "Pfam Domain" information available for 2G7M)

Asymmetric Unit(hide GO term definitions)

Chain C,D,E,X,Y,Z (Q64Z33_BACFR | Q64Z33)

molecular function
	GO:0016597	amino acid binding	Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
	GO:0004070	aspartate carbamoyltransferase activity	Catalysis of the reaction: L-aspartate + carbamoyl phosphate = N-carbamoyl-L-aspartate + H(+) + phosphate.
	GO:0016743	carboxyl- or carbamoyltransferase activity	Catalysis of the transfer of a carboxyl- or carbamoyl group from one compound (donor) to another (acceptor).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process	The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
	GO:0006520	cellular amino acid metabolic process	The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		AN0	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Leu C:275 - Pro C:276	[ RasMol ]
		Leu D:275 - Pro D:276	[ RasMol ]
		Leu E:275 - Pro E:276	[ RasMol ]
		Leu X:275 - Pro X:276	[ RasMol ]
		Leu Y:275 - Pro Y:276	[ RasMol ]
		Leu Z:275 - Pro Z:276	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2g7m
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q64Z33_BACFR \| Q64Z33
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	2.1.3.-
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	Q64Z33_BACFR \| Q64Z33
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

(no "Entries Sharing at Least One Protein Chain" available for 2G7M)

1fg7	THE SAME N-SUCCCINYLORNITHINE TRANSCARBAMYLASE COMPLEXED WITH CARBAMOYL PHOSPHATE AND N-SUCCINYLNORVALINE
1zq8	N-ACETYLORNITHINE TRANSCARBAMYLASE COMPLEXED WITH CARBAMOYL PHOSPHATE AND N-ACETYLNORVALINE
2g65	E92A MUTANT OF N-ACETYLORNITHINE TRANSCARBAMYLASE COMPLEXED WITH CARBAMOYL PHOSPHATE AND N-SUCCINYLNORVALINE
2g68	E92P MUTANT OF N-ACETYLORNITHINE TRANSCARBAMYLASE COMPLEXED WITH CARBAMOYL PHOSPHATE AND N-SUCCINYLNORVALINE
2g6a	E92S MUTANT OF N-ACETYLORNITHINE TRANSCARBAMYLASE COMPLEXED WITH CARBAMOYL PHOSPHATE AND N-SUCCINYLNORVALINE
2g6c	E92V MUTANT OF N-ACETYLORNITHINE TRANSCARBAMYLASE COMPLEXED WITH CARBAMOYL PHOSPHATE AND N-SUCCINYLNORVALINE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 14)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 12)

CATH Domains (1, 12)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File