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2G7M
Biol. Unit 2
Info
Asym.Unit (323 KB)
Biol.Unit 1 (163 KB)
Biol.Unit 2 (159 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF B. FRAGILIS N-SUCCINYLORNITHINE TRANSCARBAMYLASE P90E MUTANT COMPLEXED WITH CARBAMOYL PHOSPHATE AND N-ACETYLNORVALINE
Authors
:
D. Shi, X. Yu, L. Roth, H. Morizono, N. M. Allewell, M. Tuchman
Date
:
28 Feb 06 (Deposition) - 06 Mar 07 (Release) - 09 Dec 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : C,D,E,X,Y,Z
Biol. Unit 1: X,Y,Z (1x)
Biol. Unit 2: C,D,E (1x)
Keywords
:
Alpha/Beta, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Shi, X. Yu, J. Cabrera-Luque, T. Y. Chen, L. Roth, H. Morizono, N. M. Allewell, M. Tuchman
A Single Mutation In The Active Site Swaps The Substrate Specificity Of N-Acetyl-L-Ornithine Transcarbamylase And N-Succinyl-L-Ornithine Transcarbamylase.
Protein Sci. V. 16 1689 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: N-ACETYL-L-NORVALINE (AN0a)
1b: N-ACETYL-L-NORVALINE (AN0b)
1c: N-ACETYL-L-NORVALINE (AN0c)
1d: N-ACETYL-L-NORVALINE (AN0d)
1e: N-ACETYL-L-NORVALINE (AN0e)
1f: N-ACETYL-L-NORVALINE (AN0f)
2a: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPa)
2b: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPb)
2c: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPc)
2d: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPd)
2e: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPe)
2f: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AN0
3
Ligand/Ion
N-ACETYL-L-NORVALINE
2
CP
-1
Ligand/Ion
PHOSPHORIC ACID MONO(FORMAMIDE)ESTER
3
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(7, 7)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC9 (SOFTWARE)
3: BC1 (SOFTWARE)
4: BC2 (SOFTWARE)
5: BC3 (SOFTWARE)
6: BC4 (SOFTWARE)
7: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ARG C:35 , ARG D:35 , ARG E:35
BINDING SITE FOR RESIDUE SO4 D 356
2
AC9
SOFTWARE
ARG C:110 , PHE C:112 , GLU C:142 , PRO C:181 , LYS C:236 , CP C:646 , TRP E:75 , GLU E:90
BINDING SITE FOR RESIDUE AN0 C 645
3
BC1
SOFTWARE
SER C:47 , LEU C:48 , ARG C:49 , THR C:50 , ARG C:110 , HIS C:147 , GLN C:150 , CYS C:274 , LEU C:275 , ARG C:302 , AN0 C:645 , TRP E:75
BINDING SITE FOR RESIDUE CP C 646
4
BC2
SOFTWARE
TRP C:75 , GLU C:90 , GLU D:142 , ARG D:178 , VAL D:184 , LYS D:236 , CP D:746
BINDING SITE FOR RESIDUE AN0 D 745
5
BC3
SOFTWARE
TRP C:75 , SER D:47 , LEU D:48 , ARG D:49 , THR D:50 , ARG D:110 , HIS D:147 , GLN D:150 , CYS D:274 , LEU D:275 , ARG D:302 , AN0 D:745
BINDING SITE FOR RESIDUE CP D 746
6
BC4
SOFTWARE
TRP D:75 , GLU D:90 , PHE E:112 , GLU E:142 , PRO E:181 , LYS E:236 , CP E:846
BINDING SITE FOR RESIDUE AN0 E 845
7
BC5
SOFTWARE
TRP D:75 , SER E:47 , LEU E:48 , ARG E:49 , THR E:50 , ARG E:110 , HIS E:147 , GLN E:150 , CYS E:274 , LEU E:275 , ARG E:302 , AN0 E:845
BINDING SITE FOR RESIDUE CP E 846
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2g7mc1 (C:-1-163)
1b: SCOP_d2g7mc2 (C:164-318)
1c: SCOP_d2g7md1 (D:-1-163)
1d: SCOP_d2g7md2 (D:164-318)
1e: SCOP_d2g7me1 (E:-1-163)
1f: SCOP_d2g7me2 (E:164-318)
1g: SCOP_d2g7mx1 (X:-2-163)
1h: SCOP_d2g7mx2 (X:164-318)
1i: SCOP_d2g7my1 (Y:-2-163)
1j: SCOP_d2g7my2 (Y:164-318)
1k: SCOP_d2g7mz1 (Z:-1-163)
1l: SCOP_d2g7mz2 (Z:164-318)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
Aspartate/ornithine carbamoyltransferase
(87)
Protein domain
:
Transcarbamylase-like protein
(4)
Bacteroides fragilis [TaxId: 817]
(4)
1a
d2g7mc1
C:-1-163
1b
d2g7mc2
C:164-318
1c
d2g7md1
D:-1-163
1d
d2g7md2
D:164-318
1e
d2g7me1
E:-1-163
1f
d2g7me2
E:164-318
1g
d2g7mx1
X:-2-163
1h
d2g7mx2
X:164-318
1i
d2g7my1
Y:-2-163
1j
d2g7my2
Y:164-318
1k
d2g7mz1
Z:-1-163
1l
d2g7mz2
Z:164-318
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2g7mC02 (C:150-301)
1b: CATH_2g7mD02 (D:150-301)
1c: CATH_2g7mX01 (X:-2-147,X:302-318)
1d: CATH_2g7mY01 (Y:-2-147,Y:302-318)
1e: CATH_2g7mE02 (E:150-301)
1f: CATH_2g7mX02 (X:150-301)
1g: CATH_2g7mY02 (Y:150-301)
1h: CATH_2g7mZ02 (Z:150-301)
1i: CATH_2g7mC01 (C:-1-147,C:302-318)
1j: CATH_2g7mD01 (D:-1-147,D:302-318)
1k: CATH_2g7mE01 (E:-1-147,E:302-318)
1l: CATH_2g7mZ01 (Z:-1-147,Z:302-318)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1370, no name defined]
(91)
Bacteroides fragilis. Organism_taxid: 817.
(1)
1a
2g7mC02
C:150-301
1b
2g7mD02
D:150-301
1c
2g7mX01
X:-2-147,X:302-318
1d
2g7mY01
Y:-2-147,Y:302-318
1e
2g7mE02
E:150-301
1f
2g7mX02
X:150-301
1g
2g7mY02
Y:150-301
1h
2g7mZ02
Z:150-301
1i
2g7mC01
C:-1-147,C:302-318
1j
2g7mD01
D:-1-147,D:302-318
1k
2g7mE01
E:-1-147,E:302-318
1l
2g7mZ01
Z:-1-147,Z:302-318
[
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Pfam Domains
(0, 0)
Info
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Chain C
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Chain E
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (323 KB)
Header - Asym.Unit
Biol.Unit 1 (163 KB)
Header - Biol.Unit 1
Biol.Unit 2 (159 KB)
Header - Biol.Unit 2
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