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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE NUCLEOTIDE BINDING PROTEIN (TM0796) FROM THERMOTOGA MARITIMA AT 2.67 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  13 Feb 06  (Deposition) - 28 Feb 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.67
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Phosphate-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Hypothetical Protein (Tm0796) From Thermotoga Maritima At 2. 67 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM0796
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 18)

Asymmetric Unit (4, 18)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2FMT1Ligand/IonFORMIC ACID
3MSE12Mod. Amino AcidSELENOMETHIONINE
4PO42Ligand/IonPHOSPHATE ION
Biological Unit 1 (4, 18)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2FMT1Ligand/IonFORMIC ACID
3MSE12Mod. Amino AcidSELENOMETHIONINE
4PO42Ligand/IonPHOSPHATE ION
Biological Unit 2 (4, 36)
No.NameCountTypeFull Name
1EDO6Ligand/Ion1,2-ETHANEDIOL
2FMT2Ligand/IonFORMIC ACID
3MSE24Mod. Amino AcidSELENOMETHIONINE
4PO44Ligand/IonPHOSPHATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL B:168 , VAL B:169 , GLY B:170 , LYS B:171 , ARG B:172 , HOH B:423BINDING SITE FOR RESIDUE PO4 B 339
2AC2SOFTWAREVAL A:168 , VAL A:169 , GLY A:170 , LYS A:171 , ARG A:172 , HOH A:364 , HOH A:380 , HOH A:400BINDING SITE FOR RESIDUE PO4 A 339
3AC3SOFTWARELYS B:5 , GLN B:8BINDING SITE FOR RESIDUE EDO B 340
4AC4SOFTWAREGLN A:8BINDING SITE FOR RESIDUE EDO A 340
5AC5SOFTWAREARG A:172 , GLY A:195 , THR A:197 , GLN A:241BINDING SITE FOR RESIDUE EDO A 341
6AC6SOFTWAREGLN B:177 , GLU B:180 , ARG B:181 , GLU B:184BINDING SITE FOR RESIDUE FMT B 341

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2G0T)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:58 -Pro A:59
2Lys B:58 -Pro B:59

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2G0T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2G0T)

(-) Exons   (0, 0)

(no "Exon" information available for 2G0T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:337
 aligned with Q9WZQ3_THEMA | Q9WZQ3 from UniProtKB/TrEMBL  Length:338

    Alignment length:339
                             1                                                                                                                                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329         
         Q9WZQ3_THEMA     - -MDLWKLYQPGTPAAIVAWGQLGTAHAKTTYGLLRHSRLFKPVCVVAEHEGKMASDFVKPVRYDVPVVSSVEKAKEMGAEVLIIGVSNPGGYLEEQIATLVKKALSLGMDVISGLHFKISQQTEFLKIAHENGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETLSNAKVIGGVSLNGGFETDLPVYDPFNTDDLDEMLERAMVW 338
               SCOP domains -d2g0ta1 A:1-338 Hypothetical protein TM0796                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2g0tA01 A:0-145 NAD(P)-binding Rossmann-like Domain                                                                                               2g0tA02 A:146-338 P-loop containing nucleotide triphosphate hydrolases                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh...eeeeee......hhhhhhhhhhhhhh..eeeeeee......hhhhh.........ee.hhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhh..eeee....--.hhhhhhhhhhhhh..eee............hhhhhh..eeeeeee.....hhhhhhhhhhhhhhhh...eeeee.hhhhhhh...ee.hhhhhhhhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhh..eeeee..................hhhhhhhhhhhh...eeeeee...........ee...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g0t A   0 HmDLWKLYQPGTPAAIVAWGQLGTAHAKTTYGLLRHSRLFKPVCVVAEHEGKmASDFVKPVRYDVPVVSSVEKAKEmGAEVLIIGVSNPGGYLEEQIATLVKKALSLGmDVISGLHF--SQQTEFLKIAHENGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETLSNAKVIGGVSLNGGFETDLPVYDPFNTDDLDEmLERAmVW 338
                             |       9        19        29        39        49  |     59        69      | 79        89        99       109      |119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329 |    |  
                             |                                                 52-MSE                  76-MSE                         108-MSE 116  |                                                                                                                                                                                                                 331-MSE|  
                             1-MSE                                                                                                               119                                                                                                                                                                                                                      336-MSE


Chain B from PDB  Type:PROTEIN  Length:339
 aligned with Q9WZQ3_THEMA | Q9WZQ3 from UniProtKB/TrEMBL  Length:338

    Alignment length:339
                             1                                                                                                                                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329         
         Q9WZQ3_THEMA     - -MDLWKLYQPGTPAAIVAWGQLGTAHAKTTYGLLRHSRLFKPVCVVAEHEGKMASDFVKPVRYDVPVVSSVEKAKEMGAEVLIIGVSNPGGYLEEQIATLVKKALSLGMDVISGLHFKISQQTEFLKIAHENGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETLSNAKVIGGVSLNGGFETDLPVYDPFNTDDLDEMLERAMVW 338
               SCOP domains d2g0tb_ B: Hypothetical protein TM0796                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 2g0tB01 B:0-145 NAD(P)-binding Rossmann-like Domain                                                                                               2g0tB02 B:146-338 P-loop containing nucleotide triphosphate hydrolases                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh....eeeee......hhhhhhhhhhhhhh...eeeeee......hhhhh.........ee.hhhhhhhh...eeee.....hhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhh....eee............hhhhhh..eeeeeee.....hhhhhhhhhhhhhhhh...eeeee.hhhhhhhh..ee.hhhhhhhhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhh..eeeee..................hhhhhhhhhhhhh..eeeeee...........ee...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2g0t B   0 HmDLWKLYQPGTPAAIVAWGQLGTAHAKTTYGLLRHSRLFKPVCVVAEHEGKmASDFVKPVRYDVPVVSSVEKAKEmGAEVLIIGVSNPGGYLEEQIATLVKKALSLGmDVISGLHFKISQQTEFLKIAHENGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETLSNAKVIGGVSLNGGFETDLPVYDPFNTDDLDEmLERAmVW 338
                             |       9        19        29        39        49  |     59        69      | 79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329 |    |  
                             |                                                 52-MSE                  76-MSE                         108-MSE                                                                                                                                                                                                                        331-MSE|  
                             1-MSE                                                                                                                                                                                                                                                                                                                                        336-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2G0T)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2G0T)

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