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(-) Description

Title :  CRYSTAL STRUCTURE OF IS200 TRANSPOSASE
 
Authors :  H. H. Lee, J. Y. Yoon, H. S. Kim, J. Y. Kang, K. H. Kim, D. J. Kim, S. W. Suh
Date :  23 Nov 05  (Deposition) - 13 Dec 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mn Complex, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. H. Lee, J. Y. Yoon, H. S. Kim, J. Y. Kang, K. H. Kim, D. J. Kim, J. Y. Ha, B. Mikami, H. J. Yoon, S. W. Suh
Crystal Structure Of A Metal Ion-Bound Is200 Transposase
J. Biol. Chem. V. 281 4261 2006
PubMed-ID: 16340015  |  Reference-DOI: 10.1074/JBC.M511567200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRANSPOSASE, PUTATIVE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21A(+)
    Expression System Strain: ROSETTA2(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: SULFOLOBUS SOLFATARICUS
    Organism Taxid: 2287
    Synonym: IS200 TRANSPOSASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MN2Ligand/IonMANGANESE (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:55 , HIS A:62 , HOH A:1513 , HOH A:1519 , HOH A:1521 , HOH A:1540BINDING SITE FOR RESIDUE MN A 1501
2AC2SOFTWAREGLU B:55 , HIS B:62 , HOH B:1504 , HOH B:1506 , HOH B:1511 , HOH B:1531BINDING SITE FOR RESIDUE MN B 1502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2F4F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2F4F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2F4F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2F4F)

(-) Exons   (0, 0)

(no "Exon" information available for 2F4F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
 aligned with Q97Y68_SULSO | Q97Y68 from UniProtKB/TrEMBL  Length:133

    Alignment length:130
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
         Q97Y68_SULSO     2 ELKSTRHTKYLCNYHFVWIPKHRRNTLVNEIAEYTKEVLKSIAEELGCEIIALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFPQLNKGKLWTRSYFVATAGNVSSEVIKKYIEEQWRKEGE 131
               SCOP domains d2f4fa1 A:2-131 Putative transposase SSO1474                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee...eeee.eeeeee.........hhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh........eeeeee...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f4f A   2 ELKSTRHTKYLCNYHFVWIPKHRRNTLVNEIAEYTKEVLKSIAEELGCEIIALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFPQLNKGKLWTRSYFVATAGNVSSEVIKKYIEEQWRKEGE 131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131


Chain B from PDB  Type:PROTEIN  Length:130
 aligned with Q97Y68_SULSO | Q97Y68 from UniProtKB/TrEMBL  Length:133

    Alignment length:130
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
         Q97Y68_SULSO     2 ELKSTRHTKYLCNYHFVWIPKHRRNTLVNEIAEYTKEVLKSIAEELGCEIIALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFPQLNKGKLWTRSYFVATAGNVSSEVIKKYIEEQWRKEGE 131
               SCOP domains d2f4fb_ B: automated matches                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeee.eeeeee.........hhhhhhhhhhhhhhhhhhh..eeeeeeee..eeeeeee.....hhhhhhhhhhhhhhhhhhhhh............eeeeee...hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2f4f B   2 ELKSTRHTKYLCNYHFVWIPKHRRNTLVNEIAEYTKEVLKSIAEELGCEIIALEVMPDHIHLFVNCPPRYAPSYLANYFKGKSARLILKKFPQLNKGKLWTRSYFVATAGNVSSEVIKKYIEEQWRKEGE 131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2F4F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2F4F)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q97Y68_SULSO | Q97Y68)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0004803    transposase activity    Catalysis of the transposition of transposable elements or transposons. Transposases are involved in recombination required for transposition and are site-specific for the transposon/transposable element.
biological process
    GO:0006313    transposition, DNA-mediated    Any process involved in a type of transpositional recombination which occurs via a DNA intermediate.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q97Y68_SULSO | Q97Y68: 2f5g

(-) Related Entries Specified in the PDB File

2f5g