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(-) Description

Title :  CRYSTAL STRUCTURE OF A LUMENAL RFR-DOMAIN PROTEIN (CONTIG83.1_1_243_746) FROM CYANOTHECE SP. 51142 AT 2.1 ANGSTROM RESOLUTION.
 
Authors :  M. A. Kennedy, S. Ni, G. W. Buchko, H. Robinson
Date :  21 Nov 05  (Deposition) - 07 Nov 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta Helix, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. W. Buchko, S. Ni, H. Robinson, E. A. Welsh, H. B. Pakrasi, M. A. Kennedy
Characterization Of Two Potentially Universal Turn Motifs That Shape The Repeated Five-Residues Fold-Crystal Structure Of A Lumenal Pentapeptide Repeat Protein From Cyanothece 51142.
Protein Sci. V. 15 2579 2006
PubMed-ID: 17075135  |  Reference-DOI: 10.1110/PS.062407506
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RFR-DOMAIN
    Atcc: 51142
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30
    Expression System Strain: ROSETTA DE3 PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: FULL-LENGTH RFR-DOMAIN PROTEIN MINUS N-TERMINAL 29 RESIDUES PREDICTED TO BE A SIGNAL PEPTIDE
    Gene: RFR-DOMAIN PROTEIN
    Organism Scientific: CYANOTHECE SP. ATCC 51142
    Organism Taxid: 43989
    Strain: BH68

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2F3L)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:118 -A:138

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2F3L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2F3L)

(-) Exons   (0, 0)

(no "Exon" information available for 2F3L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:132
 aligned with RFR32_CYAA5 | B1WVN5 from UniProtKB/Swiss-Prot  Length:179

    Alignment length:132
                                    56        66        76        86        96       106       116       126       136       146       156       166       176  
          RFR32_CYAA5    47 ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLGC 178
               SCOP domains d2f3la1 A:7-138 Lumenal RFR-domain protein                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.................eee.................eee.................eeeeee..............eeeeee..............eehhhhhhhhhh...........hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2f3l A   7 ASYEDVKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAImmRTKFDDAKITGADFSLAVLDVYEVDKLCDRADGVNPKTGVSTRESLRC 138
                                    16        26        36        46        56        66        76        86  ||    96       106       116       126       136  
                                                                                                             89-MSE                                             
                                                                                                              90-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2F3L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2F3L)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (RFR32_CYAA5 | B1WVN5)
cellular component
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.
    GO:0031977    thylakoid lumen    The volume enclosed by a thylakoid membrane.

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 Related Entries

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        RFR32_CYAA5 | B1WVN5: 2g0y

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