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(-) Description

Title :  CRYSTAL STRUCTURE OF THIOACYLENZYME INTERMEDIATE OF AN NADP DEPENDENT ALDEHYDE DEHYDROGENASE
 
Authors :  K. D'Ambrosio, C. Didierjean, E. Benedetti, A. Aubry, C. Corbier
Date :  26 Oct 05  (Deposition) - 02 May 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Aldh, Gapn, Ternary Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. D'Ambrosio, A. Pailot, F. Talfournier, C. Didierjean, E. Benedetti, A. Aubry, G. Branlant, C. Corbier
The First Crystal Structure Of A Thioacylenzyme Intermediate In The Aldh Family: New Coenzyme Conformation And Relevance To Catalysis
Biochemistry V. 45 2978 2006
PubMed-ID: 16503652  |  Reference-DOI: 10.1021/BI0515117
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.2.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBLUESCRIPT SK
    Expression System Strain: DH5
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: STREPTOCOCCUS MUTANS
    Organism Taxid: 1309
    Synonym: NADP-DEPENDENT NONPHOSPHORYLATING GLYCERALDEHYDE- 3-PHOSPHATE DEHYDROGENASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1G3H4Ligand/IonGLYCERALDEHYDE-3-PHOSPHATE
2NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:150 , SER A:151 , PRO A:152 , PHE A:153 , LYS A:177 , PRO A:179 , THR A:180 , GLY A:208 , ARG A:209 , GLY A:210 , GLY A:214 , ASP A:215 , VAL A:218 , PHE A:228 , GLY A:230 , SER A:231 , ILE A:234 , ARG A:237 , ILE A:238 , GLY A:252 , CYS A:284 , LYS A:329 , SER A:330 , TYR A:333 , GLU A:377 , PRO A:378 , PHE A:379 , HOH A:1493 , HOH A:1634 , HOH A:1646BINDING SITE FOR RESIDUE NAP A 1476
2AC2SOFTWAREILE B:150 , SER B:151 , PRO B:152 , PHE B:153 , LYS B:177 , PRO B:179 , THR B:180 , GLY B:208 , GLY B:210 , GLY B:214 , ASP B:215 , VAL B:218 , PHE B:228 , GLY B:230 , SER B:231 , ILE B:234 , ARG B:237 , ILE B:238 , GLY B:252 , CYS B:284 , LYS B:329 , TYR B:333 , GLU B:377 , PHE B:379 , HOH B:2544BINDING SITE FOR RESIDUE NAP B 2476
3AC3SOFTWAREILE C:150 , SER C:151 , PRO C:152 , PHE C:153 , LYS C:177 , PRO C:179 , THR C:180 , GLY C:208 , GLY C:210 , GLY C:214 , ASP C:215 , VAL C:218 , PHE C:228 , GLY C:230 , SER C:231 , GLY C:233 , ILE C:234 , ARG C:237 , ILE C:238 , LEU C:251 , GLY C:252 , CYS C:284 , LYS C:329 , TYR C:333 , GLU C:377 , PHE C:379 , HOH C:3563 , HOH C:3602 , HOH C:3697 , HOH C:3745BINDING SITE FOR RESIDUE NAP C 3476
4AC4SOFTWAREILE D:150 , SER D:151 , PRO D:152 , PHE D:153 , LYS D:177 , PRO D:179 , THR D:180 , GLY D:208 , ARG D:209 , GLY D:210 , GLY D:214 , ASP D:215 , VAL D:218 , PHE D:228 , GLY D:230 , SER D:231 , ILE D:234 , ARG D:237 , ILE D:238 , LEU D:251 , GLY D:252 , CYS D:284 , LYS D:329 , TYR D:333 , GLU D:377 , PHE D:379 , HOH D:4479BINDING SITE FOR RESIDUE NAP D 4476
5AC5SOFTWAREARG A:103 , ASN A:154 , TYR A:155 , ARG A:283 , CYS A:284 , THR A:285 , GLN A:436 , ARG A:437 , HOH A:1622BINDING SITE FOR RESIDUE G3H A 800
6AC6SOFTWAREARG B:103 , ASN B:154 , TYR B:155 , ARG B:283 , CYS B:284 , THR B:285 , GLN B:436 , ARG B:437 , HOH B:2569BINDING SITE FOR RESIDUE G3H B 800
7AC7SOFTWAREARG C:103 , ASN C:154 , TYR C:155 , ARG C:283 , CYS C:284 , THR C:285 , GLN C:436 , ARG C:437 , HOH C:3653 , HOH C:3743 , HOH C:3747BINDING SITE FOR RESIDUE G3H C 800
8AC8SOFTWAREARG D:103 , ASN D:154 , TYR D:155 , ARG D:283 , CYS D:284 , THR D:285 , GLN D:436 , ARG D:437 , HOH D:4583BINDING SITE FOR RESIDUE G3H D 800

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ESD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ESD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ESD)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.GAPN_STRMU277-288
 
 
 		  4A:277-288
B:277-288
C:277-288
D:277-288

(-) Exons   (0, 0)

(no "Exon" information available for 2ESD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:474
 aligned with GAPN_STRMU | Q59931 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:474
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    
           GAPN_STRMU     2 TKQYKNYVNGEWKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRSLSYIERAAYLHKVADILMRDKEKIGAVLSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYVEGLINDANDKGAAALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFDIK 475
               SCOP domains d2esda_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2esdA01 A:2-251,A:451-474 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                       --2esdA02 A:254-446 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                      ----2esdA01                 - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eee..eee....eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhh.eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhh...eeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhh....hhhhh.......hhhhhhhhhhhhhhhhhh..ee.....ee..ee..eeee.....hhhhh......eeeeeee.hhhhhhhhhhhh.ee.eeeee..hhhhhhhhhhhh...eeee...............ee..ee...hhhhhhhhheeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE_DEH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2esd A   2 TKQYKNYVNGEWKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLALGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYVEGLINDANDKGATALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFDIK 475
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    


Chain B from PDB  Type:PROTEIN  Length:474
 aligned with GAPN_STRMU | Q59931 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:474
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    
           GAPN_STRMU     2 TKQYKNYVNGEWKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRSLSYIERAAYLHKVADILMRDKEKIGAVLSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYVEGLINDANDKGAAALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFDIK 475
               SCOP domains d2esdb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2esdB01 B:2-251,B:451-474 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                       --2esdB02 B:254-446 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                      ----2esdB01                 - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eee..eee....eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhh.eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh.....eee.......hhhhhhhh....eeeee.hhhhhhhhhhhhh...eeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhh....hhhhh.......hhhhhhhhhhhhhhhhhh..ee.....ee..ee..eeee.....hhhhh......eeeeeee.hhhhhhhhhhhh....eeeee..hhhhhhhhhhhh...eeee...............hhh.ee...hhhhhhhhheeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE_DEH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2esd B   2 TKQYKNYVNGEWKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLALGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYVEGLINDANDKGATALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFDIK 475
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    


Chain C from PDB  Type:PROTEIN  Length:474
 aligned with GAPN_STRMU | Q59931 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:474
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    
           GAPN_STRMU     2 TKQYKNYVNGEWKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRSLSYIERAAYLHKVADILMRDKEKIGAVLSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYVEGLINDANDKGAAALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFDIK 475
               SCOP domains d2esdc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2esdC01 C:2-251,C:451-474 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                       --2esdC02 C:254-446 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                      ----2esdC01                 - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eee..eee....eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhhhhh.eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhh.....eee...hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhh...eeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhh.....hhhhh.......hhhhhhhhhhhhhhhhhhh.ee.....ee..ee..eeee.....hhhhh......eeeeeee.hhhhhhhhhhhh....eeeee..hhhhhhhhhhhh...eeee............ee.hhh.ee.eehhhhhhhhheeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE_DEH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2esd C   2 TKQYKNYVNGEWKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLALGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYVEGLINDANDKGATALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFDIK 475
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    


Chain D from PDB  Type:PROTEIN  Length:474
 aligned with GAPN_STRMU | Q59931 from UniProtKB/Swiss-Prot  Length:475

    Alignment length:474
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471    
           GAPN_STRMU     2 TKQYKNYVNGEWKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRSLSYIERAAYLHKVADILMRDKEKIGAVLSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLELGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYVEGLINDANDKGAAALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFDIK 475
               SCOP domains d2esdd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2esdD01 D:2-251,D:451-474 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                       --2esdD02 D:254-446 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                      ----2esdD01                 - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eee..eee....eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhh.eeeeeeeee..eeeee......hhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh......eee...hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhh...eeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhh....hhhhh.......hhhhhhhhhhhhhhhhhh..ee.....ee..ee..eeee.....hhhhh......eeeeeee.hhhhhhhhhhhh....eeeee..hhhhhhhhhhhh...eeee...............hhh.ee...hhhhhhhhheeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE_DEH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2esd D   2 TKQYKNYVNGEWKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRALSYIERAAYLHKVADILMRDKEKIGAILSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRMEGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPTQGSISGLLLAEAFAEAGLPAGVFNTITGRGSEIGDYIVEHQAVNFINFTGSTGIGERIGKMAGMRPIMLALGGKDSAIVLEDADLELTAKNIIAGAFGYSGQRCTAVKRVLVMESVADELVEKIREKVLALTIGNPEDDADITPLIDTKSADYVEGLINDANDKGATALTEIKREGNLICPILFDKVTTDMRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFGIAEQLEVGTVHINNKTQRGTDNFPFLGAKKSGAGIQGVKYSIEAMTTVKSVVFDIK 475
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ESD)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (GAPN_STRMU | Q59931)
molecular function
    GO:0008886    glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity    Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(2)O + NADP(+) = 3-phospho-D-glycerate + 2 H(+) + NADPH.
    GO:0047100    glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity    Catalysis of the reaction: phosphate + NADP+ + glyceraldehyde-3-phosphate = NADPH + 3-phospho-D-glyceroyl-phosphate.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GAPN_STRMU | Q59931: 1euh 1qi1 1qi6 2euh 2id2 2qe0

(-) Related Entries Specified in the PDB File

1euh 1qi1 1qi6 2euh