Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF T.TH.HB8 BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE WITH PYRIDOXAMINE 5'-PHOSPHATE
 
Authors :  M. Goto
Date :  14 Mar 07  (Deposition) - 18 Mar 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Plp-Dependent Enzyme, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Goto
Crystal Structure Of T. Th. Hb8 Branched-Chain Amino Acid Aminotransferase With Pyridoxamine 5'-Phosphate
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE
    Chains: A, B, C, D, E, F
    EC Number: 2.6.1.42
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET11A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
    Synonym: ILVE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric/Biological Unit (2, 14)
No.NameCountTypeFull Name
1MPD8Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2PMP6Ligand/Ion4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:59 , ARG A:148 , TYR A:164 , GLU A:193 , GLY A:196 , LEU A:216 , GLY A:218 , ILE A:219 , THR A:220 , GLY A:255 , THR A:256 , HOH A:3432 , HOH A:3464 , HOH A:3482BINDING SITE FOR RESIDUE PMP A 3413
02AC2SOFTWAREARG B:59 , ARG B:148 , TYR B:164 , GLU B:193 , GLY B:196 , LEU B:216 , GLY B:218 , ILE B:219 , THR B:220 , GLY B:255 , THR B:256 , HOH B:3924 , HOH B:3995 , HOH B:4027BINDING SITE FOR RESIDUE PMP B 3913
03AC3SOFTWAREARG C:59 , ARG C:148 , TYR C:164 , GLU C:193 , GLY C:196 , LEU C:216 , GLY C:218 , ILE C:219 , THR C:220 , GLY C:255 , THR C:256 , HOH C:5422 , HOH C:5448 , HOH C:5523BINDING SITE FOR RESIDUE PMP C 4413
04AC4SOFTWAREARG D:59 , ARG D:148 , TYR D:164 , GLU D:193 , GLY D:196 , LEU D:216 , GLY D:218 , ILE D:219 , THR D:220 , GLY D:255 , THR D:256 , HOH D:1922 , HOH D:1968 , HOH D:2035BINDING SITE FOR RESIDUE PMP D 1913
05AC5SOFTWAREARG E:59 , ARG E:148 , TYR E:164 , GLU E:193 , GLY E:196 , LEU E:216 , GLY E:218 , ILE E:219 , THR E:220 , GLY E:255 , THR E:256 , HOH E:2423 , HOH E:2480 , HOH E:2565BINDING SITE FOR RESIDUE PMP E 2413
06AC6SOFTWAREARG F:59 , ARG F:148 , TYR F:164 , GLU F:193 , GLY F:196 , LEU F:216 , GLY F:218 , ILE F:219 , THR F:220 , GLY F:255 , THR F:256 , HOH F:2918 , HOH F:2988 , HOH F:2996BINDING SITE FOR RESIDUE PMP F 2913
07AC7SOFTWAREARG A:52 , GLU A:55 , GLU A:217 , GLY A:218 , ILE A:219 , ASP A:222 , HOH A:3473 , HOH A:3506 , ARG C:203 , ASP C:204BINDING SITE FOR RESIDUE MPD A 3414
08AC8SOFTWAREASP A:230 , GLU A:297 , HOH A:3479 , HOH A:3630 , GLU E:289 , ARG E:295BINDING SITE FOR RESIDUE MPD A 2415
09AC9SOFTWAREARG A:203 , ASP A:204 , ARG B:52 , GLU B:55 , GLU B:217 , GLY B:218 , ILE B:219 , ASP B:222 , HOH B:3980BINDING SITE FOR RESIDUE MPD B 3914
10BC1SOFTWAREARG B:203 , ASP B:204 , ARG C:52 , GLU C:55 , GLU C:217 , GLY C:218 , ILE C:219 , ASP C:222 , HOH C:5461BINDING SITE FOR RESIDUE MPD C 5414
11BC2SOFTWARELEU B:107 , TYR D:95 , TRP D:124 , ALA D:257 , HOH D:2035BINDING SITE FOR RESIDUE MPD D 1914
12BC3SOFTWAREARG D:52 , GLU D:55 , GLU D:217 , GLY D:218 , ILE D:219 , ASP D:222 , HOH D:1995 , ARG F:203 , ASP F:204BINDING SITE FOR RESIDUE MPD D 1915
13BC4SOFTWAREARG D:203 , ASP D:204 , ARG E:52 , GLU E:55 , GLU E:217 , GLY E:218 , ILE E:219 , ASP E:222 , HOH E:2459BINDING SITE FOR RESIDUE MPD E 2414
14BC5SOFTWAREGLU C:289 , ARG C:294 , ARG C:295 , HOH C:5667 , ASP F:230 , GLU F:297 , HOH F:2981BINDING SITE FOR RESIDUE MPD F 2914

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2EJ0)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Asn A:115 -Pro A:116
2Asn B:115 -Pro B:116
3Asn C:115 -Pro C:116
4Asn D:115 -Pro D:116
5Asn E:115 -Pro E:116
6Asn F:115 -Pro F:116

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2EJ0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2EJ0)

(-) Exons   (0, 0)

(no "Exon" information available for 2EJ0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:297
 aligned with Q5SM19_THET8 | Q5SM19 from UniProtKB/TrEMBL  Length:308

    Alignment length:305
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     
         Q5SM19_THET8     2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
               SCOP domains d2ej0a_ A: automated matches                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---2ej0A01 A:5-126  [code=3.30.470.10, no name defined]                                                                      --------2ej0A02 A:135-294 D-amino Acid Aminotransferase, subunit A, domain 2                                                                                            ------------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeehhhh.eee..hhhhhhh.eee..eeee......eeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....eeeeeeee.........hhhhh..eeeeeeee.--------....eeeee................hhhhhhhhhhhhhhhhhh...eeeee.....eeee...eeeeee..eeeee.......hhhhhhhhhhhhhh..eeeee..hhhhhhh..eeeeee...eeeeeeee..ee......hhhhhhhhhhhhhhhh..hhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ej0 A   2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEW--------VRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
                                    11        21        31        41        51        61        71        81        91       101       111       121    |    -   |   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     
                                                                                                                                                      126      135                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:305
 aligned with Q5SM19_THET8 | Q5SM19 from UniProtKB/TrEMBL  Length:308

    Alignment length:305
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     
         Q5SM19_THET8     2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
               SCOP domains d2ej0b_ B: automated matches                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---2ej0B01 B:5-130  [code=3.30.470.10, no name defined]                                                                          2ej0B02 B:131-294 D-amino Acid Aminotransferase, subunit A, domain 2                                                                                                ------------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeehhhh.eee..hhhhhhh.eee..eeee......eeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....eeeeeeee.........hhhhh..eeeeeeee......hhhhhhheeeee................hhhhhhhhhhhhhhhhhh...eeeee.....eeee...eeeeee..eeeee.......hhhhhhhhhhhhhh..eeeee..hhhhhhh..eeeeee...eeeeeeee..ee......hhhhhhhhhhhhhhhh..hhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ej0 B   2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     


Chain C from PDB  Type:PROTEIN  Length:297
 aligned with Q5SM19_THET8 | Q5SM19 from UniProtKB/TrEMBL  Length:308

    Alignment length:305
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     
         Q5SM19_THET8     2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
               SCOP domains d2ej0c_ C: automated matches                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---2ej0C01 C:5-126  [code=3.30.470.10, no name defined]                                                                      --------2ej0C02 C:135-294 D-amino Acid Aminotransferase, subunit A, domain 2                                                                                            ------------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeehhhh.eee..hhhhhhh.eee..eeeeee..eeeeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....eeeeeeee.........hhhhh..eeeeeeee.--------....eeeee................hhhhhhhhhhhhhhhhhh...eeeee.....eeee...eeeeee..eeeee.......hhhhhhhhhhhhhh..eeeee..hhhhhhh..eeeeee...eeeeeeee..ee......hhhhhhhhhhhhhhhh..hhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ej0 C   2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEW--------VRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
                                    11        21        31        41        51        61        71        81        91       101       111       121    |    -   |   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     
                                                                                                                                                      126      135                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:301
 aligned with Q5SM19_THET8 | Q5SM19 from UniProtKB/TrEMBL  Length:308

    Alignment length:305
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     
         Q5SM19_THET8     2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
               SCOP domains d2ej0d_ D: automated matches                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---2ej0D01 D:5-128  [code=3.30.470.10, no name defined]                                                                        2e    j0D02 D:129-294 D-amino Acid Aminotransferase, subunit A, domain 2                                                                                              ------------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeehhhh.eee..hhhhhhh.eee..eeeeee..eeeeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....eeeeeeee.........hhhhh..eeeeeeee.....----....eeeee................hhhhhhhhhhhhhhhhhh...eeeee.....eeee...eeeeee..eeeee.......hhhhhhhhhhhhhh..eeeee..hhhhhhh..eeeeee...eeeeeeee..ee......hhhhhhhhhhhhhhhh..hhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ej0 D   2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYL----VRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
                                    11        21        31        41        51        61        71        81        91       101       111       121        |-   |   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     
                                                                                                                                                          130  135                                                                                                                                                                           


Chain E from PDB  Type:PROTEIN  Length:294
 aligned with Q5SM19_THET8 | Q5SM19 from UniProtKB/TrEMBL  Length:308

    Alignment length:305
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     
         Q5SM19_THET8     2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
               SCOP domains d2ej0e_ E: automated matches                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---2ej0E01 E:5-126  [code=3.30.470.10, no name defined]                                                                      -----------2ej0E02 E:138-294 D-amino Acid Aminotransferase, subunit A, domain 2                                                                                         ------------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeehhhh.eee..hhhhhhh.eee..eeeeee..eeeeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....eeeeeeee.........hhhhh..eeeeeeee.-----------.eeeee................hhhhhhhhhhhhhhhhhh...eeeee.....eeee...eeeeee..eeeee.......hhhhhhhhhhhhhh..eeeee..hhhhhhh..eeeeee...eeeeeeee..ee......hhhhhhhhhhhhhhhh..hhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ej0 E   2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEW-----------GARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
                                    11        21        31        41        51        61        71        81        91       101       111       121    |    -      |141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     
                                                                                                                                                      126         138                                                                                                                                                                        


Chain F from PDB  Type:PROTEIN  Length:300
 aligned with Q5SM19_THET8 | Q5SM19 from UniProtKB/TrEMBL  Length:308

    Alignment length:305
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     
         Q5SM19_THET8     2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
               SCOP domains d2ej0f_ F: automated matches                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ---2ej0F01 F:5-132  [code=3.30.470.10, no name defined]                                                                            2ej0F02 F:133-294 D-amino Acid Aminotransferase, subunit A, domain 2                                                                                              ------------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeehhhh.eee..hhhhhhh.eee..eeee......eeehhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh....eeeeeeee.........hhhhh..eeeeeeee.-----hhhhhhheeeee................hhhhhhhhhhhhhhhhhh...eeeee.....eeee...eeeeee..eeeee.......hhhhhhhhhhhhhh...eeee..hhhhhhh..eeeeee...eeeeeeee..ee......hhhhhhhhhhhhhhhh..hhhhhh.eee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ej0 F   2 QIKAGLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGPAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVRRNGYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEW-----EEAVRKGARLITSSWARFPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEGYVAEGSGENLFFVRDGVIYALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVFMTGTAAEVTPVSMIDWRPIGKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306
                                    11        21        31        41        51        61        71        81        91       101       111       121    |    -|      141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301     
                                                                                                                                                      126   132
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2EJ0)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q5SM19_THET8 | Q5SM19)
molecular function
    GO:0004084    branched-chain-amino-acid transaminase activity    Catalysis of the reaction: a branched-chain amino acid + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0008483    transaminase activity    Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009081    branched-chain amino acid metabolic process    The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MPD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PMP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Asn A:115 - Pro A:116   [ RasMol ]  
    Asn B:115 - Pro B:116   [ RasMol ]  
    Asn C:115 - Pro C:116   [ RasMol ]  
    Asn D:115 - Pro D:116   [ RasMol ]  
    Asn E:115 - Pro E:116   [ RasMol ]  
    Asn F:115 - Pro F:116   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2ej0
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q5SM19_THET8 | Q5SM19
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  2.6.1.42
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q5SM19_THET8 | Q5SM19
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5SM19_THET8 | Q5SM19: 1wrv 2eiy 2ej2 2ej3

(-) Related Entries Specified in the PDB File

2eiy 2ej2 2ej3