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Title :   SOLUTION STRUCTURE OF FIRST PDZ DOMAIN OF PDZ DOMAIN CONTAINING PROTEIN 7

Authors :   T. N. Niraula, N. Tochio, T. Tomizawa, K. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   15 Feb 07 (Deposition) - 21 Aug 07 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Pdz Domain, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. N. Niraula, N. Tochio, T. Tomizawa, K. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of First Pdz Domain Of Pdz Domain Containing Protein 7
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - PDZ DOMAIN-CONTAINING PROTEIN 7
	Chains	:	A
	Engineered	:	YES
	Expression System Plasmid	:	P050905-06
	Expression System Vector Type	:	PLASMID
	Fragment	:	PDZ DOMAIN
	Gene	:	PDZK7
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	CELL-FREE PROTEIN SYNTHESIS


NMR Structure (20x)	:

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2EEH)

(no "Site" information available for 2EEH)

(no "SS Bond" information available for 2EEH)

(no "Cis Peptide Bond" information available for 2EEH)

(no "SAP(SNP)/Variant" information available for 2EEH)

NMR Structure (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	PDZD7_HUMAN	86-156 210-279	1	A:13-83 -

NMR Structure (4, 4)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000370215	1a	ENSE00001831789	chr10:102790890-102790830	61	PDZD7_HUMAN	-	0	0	-	-
1.2a	ENST00000370215	2a	ENSE00002192868	chr10:102790141-102789751	391	PDZD7_HUMAN	1-76	76	1	A:1-7 (gaps)	8
1.3a	ENST00000370215	3a	ENSE00001660607	chr10:102783825-102783685	141	PDZD7_HUMAN	76-123	48	1	A:8-50	43
1.3d	ENST00000370215	3d	ENSE00001779253	chr10:102783367-102783193	175	PDZD7_HUMAN	123-181	59	1	A:50-94	45
1.4a	ENST00000370215	4a	ENSE00001618361	chr10:102782142-102781966	177	PDZD7_HUMAN	181-240	60	1	A:95-100 (gaps)	8
1.4c	ENST00000370215	4c	ENSE00001785651	chr10:102781702-102781555	148	PDZD7_HUMAN	240-289	50	0	-	-
1.5	ENST00000370215	5	ENSE00001764896	chr10:102780435-102780375	61	PDZD7_HUMAN	290-310	21	0	-	-
1.6a	ENST00000370215	6a	ENSE00001776871	chr10:102778974-102778579	396	PDZD7_HUMAN	310-442	133	0	-	-
1.7	ENST00000370215	7	ENSE00001646289	chr10:102778053-102777856	198	PDZD7_HUMAN	442-508	67	0	-	-
1.8	ENST00000370215	8	ENSE00001452084	chr10:102777372-102777089	284	PDZD7_HUMAN	508-517	10	0	-	-

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:100
 aligned with PDZD7_HUMAN | Q9H5P4 from UniProtKB/Swiss-Prot  Length:517

    Alignment length:175
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201     
          PDZD7_HUMAN    32 GSDSGSTATRYLLRKQQRLLNGPPRGIRASSPMGRVILINSPIEANSDESDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLHMMVRRMGRVPGIKFSKEKTTWVDVVNRRLVVEKCGSTPSDTSSEDG 206
               SCOP domains d2 eeha_                                          A: automated matches                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..-.....-----------------------------------------..ee..eee.........eeee........eeeeee...hhhhhhh.....eeeee..ee....hhhhhhhhhhh...eeeeeee..-------------------------------.....--. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------PDZ  PDB: A:13-83 UniProt: 86-156                                      -------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2a  PDB: A:1-7 (gaps) UniProt: 1-76   ----------------------------------------------Exon 1.3d  PDB: A:50-94 UniProt: 123-181 [INCOMPLETE]      ------------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------Exon 1.3a  PDB: A:8-50 UniProt: 76-123          ---------------------------------------------------------Exon 1.4a UniProt: 181-240 Transcript 1 (2)
                 2eeh A   1 GS-SGSSG-----------------------------------------SDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLHMMVRRMG-------------------------------SGPSS--G 100
                             | |   | -         -         -         -         8        18        28        38        48        58        68        78        88     |   -         -         -       |97 |  |
                             2 3   7                                         8                                                                                    94                              95  99  |
                                                                                                                                                                                                        100

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NMR Structure

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

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Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: PDZ domain-like (299)

Superfamily: PDZ domain-like (299)

Family: automated matches (94)

Protein domain: automated matches (94)

Human (Homo sapiens) [TaxId: 9606] (71)

d2eeha_

(no "CATH Domain" information available for 2EEH)

(no "Pfam Domain" information available for 2EEH)

NMR Structure(hide GO term definitions)

Chain A (PDZD7_HUMAN | Q9H5P4)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
	GO:0060117	auditory receptor cell development	The process whose specific outcome is the progression of an auditory receptor cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate.
	GO:0060088	auditory receptor cell stereocilium organization	A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a stereocilium. A stereocilium is an actin-based protrusion from the apical surface of auditory hair cells.
	GO:0050910	detection of mechanical stimulus involved in sensory perception of sound	The series of events involved in the perception of sound vibration in which the vibration is received and converted into a molecular signal.
	GO:0045184	establishment of protein localization	The directed movement of a protein to a specific location.
cellular component
	GO:1990696	USH2 complex	A protein complex composed of four proteins, loss of which results in Usher Syndrome type 2 (USH2 syndrome), a leading genetic cause of combined hearing and vision loss. This complex is conserved in many species; in mice, it is composed of USH2A, GPR98 (aka ADGRV1), WHRN, and PDZD7.
	GO:0042995	cell projection	A prolongation or process extending from a cell, e.g. a flagellum or axon.
	GO:0005929	cilium	A specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface and of some cytoplasmic parts. Each cilium is largely bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored to a basal body.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0002141	stereocilia ankle link	A stereocilia coupling link that is composed of a fine filament present in developing stereocilia that couples the bases of individual stereocilia to one another. They are not present in mature stereocilia.

NMR Structure
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