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(-) Description

Title :  CRYSTAL STRUCTURE OF ENVELOPE PROTEIN VP26 FROM WHITE SPOT SYNDROME VIRUS (WSSV)
 
Authors :  C. L. Hew, X. H. Tang, J. Sivaraman
Date :  14 Feb 07  (Deposition) - 05 Jun 07  (Release) - 23 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Beta Barrel, Beta Sheet Protruding Region, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. H. Tang, J. L. Wu, J. Sivaraman, C. L. Hew
Crystal Structures Of Major Envelope Proteins Vp26 And Vp28 From White Spot Syndrome Virus Shed Light On Their Evolutionary Relationship
J. Virol. V. 81 6709 2007
PubMed-ID: 17409146  |  Reference-DOI: 10.1128/JVI.02505-06

(-) Compounds

Molecule 1 - 22KDA STRUCTURAL PROTEIN VP22
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PGEX6P-1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 41-201
    Organism Scientific: SHRIMP WHITE SPOT SYNDROME VIRUS
    Organism Taxid: 92652
    Synonym: VP26, VP26 STRUCTURAL PROTEIN, WSSV367, MAJOR VIRION PROTEIN VP26, ORF153, VP26, GENE FAMILY 1, WSV311, P22, 26 KDA STRUCTURAL PROTEIN VP26

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2EDM)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2EDM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2EDM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2EDM)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2EDM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:161
 aligned with Q0PW17_WSSV | Q0PW17 from UniProtKB/TrEMBL  Length:204

    Alignment length:161
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 
          Q0PW17_WSSV    41 SVVANYDQMMRVPIQRRAKVMSIRGERSYNTPLGKVAMKNGLSDKDMKDVSADLVISTVTAPRTDPAGTGAENSNMTLKILNNTGVDLLINDITVRPTVIAGNIKGNTMSNTYFSSKDIKSSSSKITLIDVCSKFEDGAAFEATMNIGFTSKNVIDIKDEI 201
               SCOP domains d2edma1 A:41-201 Envelope protein VP26                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eeeeeeeeeee..eeee..eeeeee..eeeeee.....hhhhhh...eeeee..............eeeeeeeeee.....eeeeeeeee.eee..eee.....eeee...ee.......eeeeeeee......eeeeeeeeeee...eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2edm A  41 SVVANYDQMMRVPIQRRAKVMSIRGERSYNTPLGKVAMKNGLSDKDMKDVSADLVISTVTAPRTDPAGTGAENSNMTLKILNNTGVDLLINDITVRPTVIAGNIKGNTMSNTYFSSKDIKSSSSKITLIDVCSKFEDGAAFEATMNIGFTSKNVIDIKDEI 201
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 


Chain A from PDB  Type:PROTEIN  Length:161
 aligned with Q9ICG6_WSSV | Q9ICG6 from UniProtKB/TrEMBL  Length:204

    Alignment length:161
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 
          Q9ICG6_WSSV    41 SVVANYDQMMRVPIQRRAKVMSIRGERSYNTPLGKVAMKNGLSDKDMKDVSADLVISTVTAPRTDPAGTGAENSNMTLKILNNTGVDLLINDITVRPTVIAGNIKGNTMSNTYFSSKDIKSSSSKITLIDVCSKFEDGAAFEATMNIGFTSKNVIDIKDEI 201
               SCOP domains d2edma1 A:41-201 Envelope protein VP26                                                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eeeeeeeeeee..eeee..eeeeee..eeeeee.....hhhhhh...eeeee..............eeeeeeeeee.....eeeeeeeee.eee..eee.....eeee...ee.......eeeeeeee......eeeeeeeeeee...eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2edm A  41 SVVANYDQMMRVPIQRRAKVMSIRGERSYNTPLGKVAMKNGLSDKDMKDVSADLVISTVTAPRTDPAGTGAENSNMTLKILNNTGVDLLINDITVRPTVIAGNIKGNTMSNTYFSSKDIKSSSSKITLIDVCSKFEDGAAFEATMNIGFTSKNVIDIKDEI 201
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2EDM)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (2, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q9ICG6_WSSV | Q9ICG6)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Chain A   (Q0PW17_WSSV | Q0PW17)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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(-) Related Entries Specified in the PDB File

2ed6 ENVELOPE PROTEIN VP28 FROM WSSV