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(-) Description

Title :  CRYSTAL STRUCTURE OF ENVELOPE PROTEIN VP28 FROM WHITE SPOT SYNDROME VIRUS (WSSV)
 
Authors :  C. L. Hew, J. Sivaraman, X. H. Tang
Date :  14 Feb 07  (Deposition) - 05 Jun 07  (Release) - 16 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  G,H,I  (1x)
Biol. Unit 4:  J,K,L  (1x)
Keywords :  Beta Barrel, N-Terminal Helix Protruding Region, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Tang, J. Wu, J. Sivaraman, C. L. Hew
Crystal Structures Of Major Envelope Proteins Vp26 And Vp28 From White Spot Syndrome Virus Shed Light On Their Evolutionary Relationship
J. Virol. V. 81 6709 2007
PubMed-ID: 17409146  |  Reference-DOI: 10.1128/JVI.02505-06

(-) Compounds

Molecule 1 - 25KDA STRUCTURAL PROTEIN VP25
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PGEX6P-1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 32-201
    Organism Scientific: SHRIMP WHITE SPOT SYNDROME VIRUS
    Organism Taxid: 92652
    Synonym: MAJOR STRUCTURAL PROTEIN VP28, VP28, ENVELOPE PROTEIN VP28, MAJOR VIRION PROTEIN VP28, VP28 STRUCTURAL PROTEIN, WSSV480, ORF1, VP28, GENE FAMILY 1, WSV421, STRUCTURAL PROTEIN, 28 KDA STRUCTURAL PROTEIN VP28

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABC         
Biological Unit 2 (1x):    DEF      
Biological Unit 3 (1x):       GHI   
Biological Unit 4 (1x):          JKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2ED6)

(-) Sites  (0, 0)

(no "Site" information available for 2ED6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ED6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ED6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ED6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ED6)

(-) Exons   (0, 0)

(no "Exon" information available for 2ED6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:170
 aligned with Q9ICB7_WSSV | Q9ICB7 from UniProtKB/TrEMBL  Length:204

    Alignment length:170
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
          Q9ICB7_WSSV    32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
               SCOP domains d2ed6a1 A:32-201 Envelope protein VP28                                                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeeeee......eee..eeeee...eeeee....hhhhhh.....eeeee........hhhhh.eee..eeeee.....eeeeeeeeee............eeeee..eee....eeee.eeeee.....hhhhh.eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ed6 A  32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201


Chain B from PDB  Type:PROTEIN  Length:170
 aligned with Q9ICB7_WSSV | Q9ICB7 from UniProtKB/TrEMBL  Length:204

    Alignment length:170
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
          Q9ICB7_WSSV    32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
               SCOP domains d2ed6b_ B: Envelope protein VP28                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeeeee......eee..eeeee...eeeee....hhhhhh.....eeeee........hhhhh.eee..eeeee.....eeeeeeeeee............eeeee..eee....eeee.eeeee.....hhhhh.eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ed6 B  32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201


Chain C from PDB  Type:PROTEIN  Length:170
 aligned with Q9ICB7_WSSV | Q9ICB7 from UniProtKB/TrEMBL  Length:204

    Alignment length:170
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
          Q9ICB7_WSSV    32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
               SCOP domains d2ed6c_ C: Envelope protein VP28                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeeeee......eee..eeeee...eeeee....hhhhhh.....eeeee........hhhhh.eee..eeeee.....eeeeeeeeee............eeeee..eee....eeee.eeeee.....hhhhh.eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ed6 C  32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201


Chain D from PDB  Type:PROTEIN  Length:170
 aligned with Q9ICB7_WSSV | Q9ICB7 from UniProtKB/TrEMBL  Length:204

    Alignment length:170
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
          Q9ICB7_WSSV    32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
               SCOP domains d2ed6d_ D: Envelope protein VP28                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeeeee......eee..eeeee...eeeee....hhhhhh.....eeeee........hhhhh.eee..eeeee.....eeeeeeeeee............eeeee..eee....eeee.eeeee.....hhhhh.eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ed6 D  32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201


Chain E from PDB  Type:PROTEIN  Length:170
 aligned with Q9ICB7_WSSV | Q9ICB7 from UniProtKB/TrEMBL  Length:204

    Alignment length:170
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
          Q9ICB7_WSSV    32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
               SCOP domains d2ed6e_ E: Envelope protein VP28                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeeeee......eee..eeeee...eeeee....hhhhhh.....eeeee........hhhhh.eee..eeeee.....eeeeeeeeee............eeeee..eee....eeee.eeeee.....hhhhh.eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ed6 E  32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201


Chain F from PDB  Type:PROTEIN  Length:170
 aligned with Q9ICB7_WSSV | Q9ICB7 from UniProtKB/TrEMBL  Length:204

    Alignment length:170
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
          Q9ICB7_WSSV    32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
               SCOP domains d2ed6f_ F: Envelope protein VP28                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeeeee......eee..eeeee...eeeee....hhhhhh.....eeeee........hhhhh.eee..eeeee.....eeeeeeeeee............eeeee..eee....eeee.eeeee.....hhhhh.eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ed6 F  32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201


Chain G from PDB  Type:PROTEIN  Length:170
 aligned with Q9ICB7_WSSV | Q9ICB7 from UniProtKB/TrEMBL  Length:204

    Alignment length:170
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
          Q9ICB7_WSSV    32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
               SCOP domains d2ed6g_ G: Envelope protein VP28                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeeeee......eee..eeeee...eeeee....hhhhhh.....eeeee........hhhhh.eee..eeeee.....eeeeeeeeee............eeeee..eee....eeee.eeeee.....hhhhh.eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ed6 G  32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201


Chain H from PDB  Type:PROTEIN  Length:170
 aligned with Q9ICB7_WSSV | Q9ICB7 from UniProtKB/TrEMBL  Length:204

    Alignment length:170
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
          Q9ICB7_WSSV    32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
               SCOP domains d2ed6h_ H: Envelope protein VP28                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeeeee......eee..eeeee...eeeee....hhhhhh.....eeeee........hhhhh.eee..eeeee.....eeeeeeeeee............eeeee..eee....eeee.eeeee.....hhhhh.eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ed6 H  32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201


Chain I from PDB  Type:PROTEIN  Length:170
 aligned with Q9ICB7_WSSV | Q9ICB7 from UniProtKB/TrEMBL  Length:204

    Alignment length:170
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
          Q9ICB7_WSSV    32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
               SCOP domains d2ed6i_ I: Envelope protein VP28                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeeeee......eee..eeeee...eeeee....hhhhhh.....eeeee........hhhhh.eee..eeeee.....eeeeeeeeee............eeeee..eee....eeee.eeeee.....hhhhh.eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ed6 I  32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201


Chain J from PDB  Type:PROTEIN  Length:170
 aligned with Q9ICB7_WSSV | Q9ICB7 from UniProtKB/TrEMBL  Length:204

    Alignment length:170
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
          Q9ICB7_WSSV    32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
               SCOP domains d2ed6j_ J: Envelope protein VP28                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeeeee......ee...eeeee...eeeee....hhhhhh.....eeeee..............eee..eeeee.....eeeeeeeeee............eeeeee.eee....eeeeeeeeee.....hhhhh.eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ed6 J  32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201


Chain K from PDB  Type:PROTEIN  Length:170
 aligned with Q9ICB7_WSSV | Q9ICB7 from UniProtKB/TrEMBL  Length:204

    Alignment length:170
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
          Q9ICB7_WSSV    32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
               SCOP domains d2ed6k_ K: Envelope protein VP28                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeeeee......ee...eeeee...eeeee....hhhhhh.....eeeee..............eee..eeeee.....eeeeeeeeee............eeeee..eee....eeee.eeeee.....hhhhh.eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ed6 K  32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201


Chain L from PDB  Type:PROTEIN  Length:170
 aligned with Q9ICB7_WSSV | Q9ICB7 from UniProtKB/TrEMBL  Length:204

    Alignment length:170
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
          Q9ICB7_WSSV    32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
               SCOP domains d2ed6l_ L: Envelope protein VP28                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.eeeeeeeeee......ee...eeeee...eeeee....hhhhhh.....eeeee........hhhhh.eee..eeeee.....eeeeeeeeee............eeeeee.eee....eeeeeeeeee.....hhhhh.eeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ed6 L  32 TVTKTIETHTDNIETNMDENLRIPVTAEVGSGYFKMTDVSFDSDTLGKIKIRNGKSDAQMKEEDADLVITPVEGRALEVTVGQNLTFEGTFKVWNNTSRKINITGMQMVPKINPSKAFVGSSNTSSFTPVSIDEDEVGTFVCGTTFGAPIAATAGGNLFDMYVHVTYSGT 201
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ED6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2ED6)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (Q9ICB7_WSSV | Q9ICB7)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.

 Visualization

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Asymmetric Unit
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  Ligands, Modified Residues, Ions
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  Sites
(no "Sites" information available for 2ed6)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2ed6)
 
Biological Units
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2edm ENVELOPE PROTEIN VP26 FROM WSSV