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(-) Description

Title :  STRUCTURE OF THE LRP/ASNC LIKE TRANSCRIPTIONAL REGULATOR FROM SULFOLOBUS TOKODAII 7 COMPLEXED WITH ITS COGNATE LIGAND
 
Authors :  T. S. Kumarevel, P. Karthe, N. Nakano, A. Shinkai, S. Yokoyama, Riken S Genomics/Proteomics Initiative (Rsgi)
Date :  15 Jan 07  (Deposition) - 15 Jan 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (8x)
Keywords :  Transcriptional Reggulator, Lrp/Asnc, St1022, Gln Binding, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. S. Kumarevel, N. Nakano, K. Ponnuraj, S. C. Gopinath, K. Sakamoto, A. Shinkai, P. K. Kumar, S. Yokoyama
Crystal Structure Of Glutamine Receptor Protein From Sulfolobus Tokodaii Strain 7 In Complex With Its Effector L-Glutamine: Implications Of Effector Binding In Molecular Association And Dna Binding.
Nucleic Acids Res. V. 36 4808 2008
PubMed-ID: 18653535  |  Reference-DOI: 10.1093/NAR/GKN456

(-) Compounds

Molecule 1 - 150AA LONG HYPOTHETICAL TRANSCRIPTIONAL REGULATOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ST1022
    Organism Scientific: SULFOLOBUS TOKODAII
    Organism Taxid: 111955

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (8x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1GLN2Mod. Amino AcidGLUTAMINE
2MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 16)
No.NameCountTypeFull Name
1GLN16Mod. Amino AcidGLUTAMINE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:51 , ASN A:146BINDING SITE FOR RESIDUE MG A 1001
2AC2SOFTWARELYS A:31 , SER A:32BINDING SITE FOR RESIDUE GLN A 501
3AC3SOFTWARETYR A:73 , TYR A:77 , PHE A:96 , VAL A:97 , LEU A:98 , GLY A:99 , ASN A:101 , ASP A:102 , LEU A:120 , THR A:132 , SER A:133 , THR A:134 , HOH A:1006BINDING SITE FOR RESIDUE GLN A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2E7X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2E7X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2E7X)

(-) Exons   (0, 0)

(no "Exon" information available for 2E7X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
 aligned with F9VNT4_SULTO | F9VNT4 from UniProtKB/TrEMBL  Length:150

    Alignment length:152
                                                                                                                                                                               150  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
         F9VNT4_SULTO     1 MDEIDLRILKILQYNAKYSLDEIAREIRIPKSTLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAKYGKNYHVELGNKLAQIPGVWGVYFVLGDNDFIVMARYKTREEFMEKFLERVMSIPEVERTSTQVVVKIIKESPNIVIF--   -
               SCOP domains d2e7xa1 A:1-60 automated matches                            d2e7xa2 A:61-150 automated matches                                                        -- SCOP domains
               CATH domains 2e7xA01 A:1-52                                      2e7xA02 A:53-150  [code=3.30.70.920, no name defined]                                             -- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.....hhhhhhhhhh.hhhhhhhhhhhhhhh..........hhhhhh..eeeeeeeee....hhhhhhhhhhhh...eeeeee......eeeeeee.hhhhhhhhhhhhhh....eeeeeeee................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2e7x A   1 MDEIDLRILKILQYNAKYSLDEIAREIRIPKSTLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAKYGKNYHVELGNKLAQIPGVWGVYFVLGDNDFIVMARYKTREEFMEKFLERVMSIPEVERTSTQVVVKIIKESPNIVIFQQ 502
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150| 
                                                                                                                                                                               150| 
                                                                                                                                                                                501
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2E7X)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A   (F9VNT4_SULTO | F9VNT4)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
    GO:0003700    transcription factor activity, sequence-specific DNA binding    Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        F9VNT4_SULTO | F9VNT4: 2e7w 2efn 2efo 2efp 2efq 2pmh 2pn6 2yx4 2yx7

(-) Related Entries Specified in the PDB File

2e7w RELATED ID: STO001001022.2 RELATED DB: TARGETDB