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NMR Structure - model 1 (Jmol Viewer)

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Title :   C-TERMINAL DOMAIN OF EPSILON SUBUNIT OF F1F0-ATP SYNTHASE FROM THE THERMOPHILIC BACILLUS PS3

Authors :   H. Yagi, H. Akutsu

Date :   25 Dec 06 (Deposition) - 10 Jul 07 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Atp Synthase, F1Fo Atp Synthase, F1-Atpase, Epsilon Subunit, Atp, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Yagi, N. Kajiwara, H. Tanaka, T. Tsukihara, Y. Kato-Yamada, M. Yoshida, H. Akutsu
Structures Of The Thermophilic F1-Atpase {Varepsilon} Subunit Suggesting Atp-Regulated Arm Motion Of Its C-Terminal Domain In F1
Proc. Natl. Acad. Sci. Usa V. 104 11233 2007
PubMed-ID: 17581881 | Reference-DOI: 10.1073/PNAS.0701045104
(for further references see the PDB file header)

Molecule 1 - ATP SYNTHASE EPSILON CHAIN
	Chains	:	A
	EC Number	:	3.6.3.14
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET32A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	C-TERMINAL DOMAIN, RESIDUES 88-127
	Organism Scientific	:	BACILLUS SP. PS3
	Organism Taxid	:	2334
	Synonym	:	ATP SYNTHASE F1 SECTOR EPSILON SUBUNIT


NMR Structure (20x)	:

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2E5U)

(no "Site" information available for 2E5U)

(no "SS Bond" information available for 2E5U)

(no "Cis Peptide Bond" information available for 2E5U)

(no "SAP(SNP)/Variant" information available for 2E5U)

(no "PROSITE Motif" information available for 2E5U)

(no "Exon" information available for 2E5U)

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:40
 aligned with ATPE_BACP3 | P07678 from UniProtKB/Swiss-Prot  Length:132

    Alignment length:40
                                       99                           
                                     98 |                           
                                    97| |    106       116       126
           ATPE_BACP3    88 IDVLRAKARKS-GRTPLQSQQDDIDFKRAELALKRAMNRL 126
               SCOP domains ---------------------------------------- SCOP domains
               CATH domains ---------------------------------------- CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 2e5u A  88 IDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMNRL 127
                                    97       107       117       127

Chain A from PDB  Type:PROTEIN  Length:40
 aligned with ATPE_GEOKA | Q5KUJ4 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:40
                                    97       107       117       127
           ATPE_GEOKA    88 IDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMNRL 127
               SCOP domains ---------------------------------------- SCOP domains
               CATH domains ---------------------------------------- CATH domains
               Pfam domains ---------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------- PROSITE
                 Transcript ---------------------------------------- Transcript
                 2e5u A  88 IDVLRAKAAKERAERRLQSQQDDIDFKRAELALKRAMNRL 127
                                    97       107       117       127

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2E5U)

(no "CATH Domain" information available for 2E5U)

(no "Pfam Domain" information available for 2E5U)

NMR Structure(hide GO term definitions)

Chain A (ATPE_GEOKA | Q5KUJ4)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
	GO:0046961	proton-transporting ATPase activity, rotational mechanism	Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
	GO:0006754	ATP biosynthetic process	The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0015986	ATP synthesis coupled proton transport	The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
	GO:0006811	ion transport	The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0042777	plasma membrane ATP synthesis coupled proton transport	The transport of protons across the plasma membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
	GO:0015992	proton transport	The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

Chain A (ATPE_BACP3 | P07678)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
	GO:0046961	proton-transporting ATPase activity, rotational mechanism	Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
biological process
	GO:0006754	ATP biosynthetic process	The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0015986	ATP synthesis coupled proton transport	The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
	GO:0006811	ion transport	The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0042777	plasma membrane ATP synthesis coupled proton transport	The transport of protons across the plasma membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
	GO:0015992	proton transport	The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.

NMR Structure
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	ATPE_GEOKA \| Q5KUJ4
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	3.6.3.14
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UniProtKB/Swiss-Prot
	ATPE_BACP3 \| P07678	:	2e5t 2e5y
	ATPE_GEOKA \| Q5KUJ4	:	2e5t 4xd7

1aqt	THE SAME PROTEIN FORM E.COLI.
1bsn	THE SAME PROTEIN FORM E.COLI.
2e5t	C-TERMINAL DOMAIN OF THE SAME PROTEIN IN THE PRESENCE OF ATP CONDITION
2e5y	CRYSTAL STRUCTURE OF THE SAME PROTEIN IN COMPLEX WITH ATP

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